Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2300 ATGGCCAAGGAACCTTCTCTGTGCCTCTTCCTCCTCTCTTTTCTCATTCTCCTCTCTTCCGGGACTGCATCTTCACCCTCTCTTGCTACCGCATTCCTCCACAAAACCAAGATCTCCAAATCTGAGATTCGGCTTTCTGTTACTGATTACAACATTTTCAACACTCTCACTGCCACCGACCTGCCAGTTGATTTCTTCTTAAACGAAAGCGTGGTTGAAAATTTTGTTTCTTCAAAATCATCTCCGGTTGCATGGCTGAAAGTTCATCTTTTGAACATTCTTCCACAAGTGGACATCAGGAGCATCGTTGTTAGATGTGGCAGTGAGTGCTTAGGCCGAGATGAGATGCCTTTACTCACACCTGTTATGGAATCAATTCATTCGTTTCTCAGCAATCTTCAACTAGGGAGGGAAGTTAAAGTCTCAGTGTCATTTCCGCTTTCGTTCTTAGAGAATTTGAATGCATCATATGAAAATGAGCTTCTTAGGATTGTTGCTTTTGTGAAGAAAATAGATTCATTTATCATGCTAGAGGATGCAATTGATGGGGAATCGGAAACTGTTCAGTCTGTTATTGAAAGAGCCACACTTGCTTCTATTCTTCCTTGCAAAGATGTTCCTGTGGTTTTCGCAACCAAGAGCAGTGGTATGGAATTAGCTGAATTTAGTGAGGCAGTATCCAAATATCTTGAAGCAGGATCTCGTTTTACTAAAAGGATTGCTGCATTGTATGCAGAAGTACAGACAAGCAAAGGTTTTGTACTGGAAGATCTCAAAAGAGAAGAGGGAGAAGGGATAATTCCTTTGACCCTAGGAGAAAAGCCAAGCAAAGTCCACATCAGAAGAATTCTCCAAGTCCCAACCAACTCACCTAACACAGTTTCCCCCACAAATCCAACCCCACCTTCACCAGTCATCTCACCTCCAGATACACCAACCATCATCACAGTTCCTTCCACCAATCCTGTCACAGTTTCCCCCACTAATCCAGGAGCAACACCTGTGACAGTTCCTTCTACCACACCAGCTGTTCCCTTAGCCCCTGTAAATCCAGCCAATCCAGGGGCTCAACCAGTCACCAACCCTGCGAGCTCTTATCCACCCCCATCAGGAAATGGTCCTGTCACAAATGCCCTTCCTCCTCCTCCAAGCACAAATTCTCAAGCCACGCCAGGGGGGCAGAGTTGGTGTGTGGCAAAGACTGGAGTTTCAGAAGCTACTCTTCAATCAGCACTGGACTATGCTTGTGGAATGCCAAGTGTAGATTGTTCACAAATACAGCAAGGTGGAAGTTGTTACAATCCAAATTCATTACAAAACCATGCTTCTTTTGCCTTCAACAGCTACTACCAGAAGAATCTTGCGTCAACAAGCTGTGACTTTGGAGGCACAGCAACCATAGTTAACACCAATCCAAGCTCGGGTTCTTGCATTTATCCATCTTCTTCAGGGGCAGGCACATCCGGCTCTATTGGCTCTCCTTCAGTTTCAGGATCCCAAAGCCCTCCTGATTTAAATACCTCAAATTCAGCTGCTCTGAGGCCTTTTCTTGACCATATGGTTCTGGTAGTAATATCCTTAGTCAGCATAAGACTCTCTATATGA 1605 0.4461 MAKEPSLCLFLLSFLILLSSGTASSPSLATAFLHKTKISKSEIRLSVTDYNIFNTLTATDLPVDFFLNESVVENFVSSKSSPVAWLKVHLLNILPQVDIRSIVVRCGSECLGRDEMPLLTPVMESIHSFLSNLQLGREVKVSVSFPLSFLENLNASYENELLRIVAFVKKIDSFIMLEDAIDGESETVQSVIERATLASILPCKDVPVVFATKSSGMELAEFSEAVSKYLEAGSRFTKRIAALYAEVQTSKGFVLEDLKREEGEGIIPLTLGEKPSKVHIRRILQVPTNSPNTVSPTNPTPPSPVISPPDTPTIITVPSTNPVTVSPTNPGATPVTVPSTTPAVPLAPVNPANPGAQPVTNPASSYPPPSGNGPVTNALPPPPSTNSQATPGGQSWCVAKTGVSEATLQSALDYACGMPSVDCSQIQQGGSCYNPNSLQNHASFAFNSYYQKNLASTSCDFGGTATIVNTNPSSGSCIYPSSSGAGTSGSIGSPSVSGSQSPPDLNTSNSAALRPFLDHMVLVVISLVSIRLSI* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2300 534 Pfam X8 domain 396 466 IPR012946 -
Pvu1g2300 534 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN PROTEIN 130 493 - -
Pvu1g2300 534 MobiDBLite consensus disorder prediction 320 340 - -
Pvu1g2300 534 MobiDBLite consensus disorder prediction 320 392 - -
Pvu1g2300 534 MobiDBLite consensus disorder prediction 361 387 - -
Pvu1g2300 534 SMART X8_cls 395 479 IPR012946 -
Pvu1g2300 534 Gene3D Glycosidases 19 178 - -
Pvu1g2300 534 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 130 493 IPR044965 GO:0004553|GO:0005975
Pvu1g2300 534 Gene3D - 392 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2300 Pvu-Chr1 48471233 48474615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2300 41 482 Glycoside Hydrolase AT2G05790 26.439 9.39e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2300 - - gmx:100789503 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2300 1 48471233 48474615 Pvu1g2300 1 48471233 48474615 ECH
Pvu1g2300 1 48471233 48474615 Pvu7g2103 7 44360222 44363789 PCT