Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2287 ATGAAGTTCTTACCCTCCCTTCTACTCTTGACTTTTGCTTTGCTGCTAACCACCATCACTGCATCAGATCCTGATCCTCTTCAAGACCTCTGTGTCGCTGACCTTGCCTCAGCTGTTAAAGTGAATGGATTCACCTGCAAAGATGCTGCCAAGGTAAATGCCAGTGATTTCTTCTCAGACATACTAGCCAAACCAGGTGCCACAAACAATACCTATGGGTCCTTGGTGACTGGAGCCAATGTTCAGAAAATCCCAGGACTGAACACCCTTGGTGTATCTCTGTCACGAGTTGACTATGCTCCTGGTGGCATCAACCCTCCCCACACTCACCCACGTGCCACCGAGATTGTGTTTGTGCTGGAAGGAACCCTCGATGTTGGGTTCATAACCACAGCCAATGTGCTGATATCAAAGACCATCTACAAGGGTGAGATTTTTGTGTTCCCAAAAGGCTTAGTTCACTTCCAAAAGAACAATGCAAAGGAACCTGCTTCAGTCCTTGCAGCCTTCAACAGCCAATTACCTGGCACACAGTCCATTGCTCTCACCTTGTTTGCAGCCACACCACCTGTTCCAGACAACGTCTTGACCAAGGCCTTCCAGGTTGGTACCAAGGAGGTTCAGAAGATCAAGTCTAGGCTTGCACCTAATTAA 654 0.4801 MKFLPSLLLLTFALLLTTITASDPDPLQDLCVADLASAVKVNGFTCKDAAKVNASDFFSDILAKPGATNNTYGSLVTGANVQKIPGLNTLGVSLSRVDYAPGGINPPHTHPRATEIVFVLEGTLDVGFITTANVLISKTIYKGEIFVFPKGLVHFQKNNAKEPASVLAAFNSQLPGTQSIALTLFAATPPVPDNVLTKAFQVGTKEVQKIKSRLAPN* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2287 217 SMART Cupin_1_3 59 208 IPR006045 -
Pvu1g2287 217 SUPERFAMILY RmlC-like cupins 23 213 IPR011051 -
Pvu1g2287 217 Pfam Cupin 62 208 IPR006045 -
Pvu1g2287 217 PRINTS Germin signature 108 128 IPR001929 GO:0030145
Pvu1g2287 217 PRINTS Germin signature 138 158 IPR001929 GO:0030145
Pvu1g2287 217 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Pvu1g2287 217 PANTHER GERMIN-LIKE PROTEIN 9 215 - -
Pvu1g2287 217 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 9 215 - -
Pvu1g2287 217 CDD cupin_OxOx 23 214 - -
Pvu1g2287 217 ProSitePatterns Germin family signature. 103 116 IPR019780 GO:0030145
Pvu1g2287 217 Gene3D Jelly Rolls 22 216 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2287 Pvu-Chr1 48354294 48355917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2287 8 216 Miscellaneous Gene Families AT3G05930 57.143 1.78e-85 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2287 - - gmx:100302722 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2287 1 48354294 48355917 Pvu7g2125 7 44582433 44584284 PCT