Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2261 ATGACATCTTCATTCTCTCTCATTCTTCCCTTCTTCTCCACCTTATTATGTTTCTCTTTTGCTCTTCTCTTCTCTGCACCTTTAGGAGCTGAAGCTTGGTCCAAACCCCACACACCCATCTCTTCTCTCATCACCAAAACTCTTTTTGACTCCTTTTTCCTTCACAAAGATGACACTGCATGCCCTGCCAAAGACTTCTACACCTACGACTCCTTCATTCGTGCATCAAAATCCTTCCCCGCATTTGGTACCACTGGTTGTTTAGCCACGCGCAAGCGTGAGATTGCTGCGTTTCTCGCTCAGATTTCCCATGAAACCACAGGTGGGTGGGCCACTGCACCTGATGGCCCATTTGCTTGGGGCTTGTGCTTCAAGGAGGAGATTAGTCCTCAGACTAATTACTGCGATTCTACTAACACCCAATGGCCTTGCTTCCCTGGCAAAAGCTACAAGGGAAGAGGACCAATTCAGCTTTCTTGGAACTACAACTATGGACCAGCAGGGAAGGCGTTGGGATTTGATGGGCTGGGGAATCCAGAGATTGTGGCGAACAATTCAGTGATAGCATTCAAAACTGGTCTGTGGTTTTGGATGACAGAGCAAAAGCCGAAACCTTCTTGCCACGACGTTATGGTTGGGAAATACGTGGCTACAGAAGGTGACATAGCAGCGAATCGAACATCTGGTTATGGCTTGGTCACTAACATAATCAATGGTGGACTTGAATGTGGGATTCCTGGTGATGCAAGAGTCAATGATCGAATTGGGTTTTTCCAAAGATACACAAAGTTGCTCAACGTGGACACTGGACCTAACTTGGATTGTGCATATCAGAAACCCTTCTAA 846 0.4657 MTSSFSLILPFFSTLLCFSFALLFSAPLGAEAWSKPHTPISSLITKTLFDSFFLHKDDTACPAKDFYTYDSFIRASKSFPAFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLCFKEEISPQTNYCDSTNTQWPCFPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLGNPEIVANNSVIAFKTGLWFWMTEQKPKPSCHDVMVGKYVATEGDIAANRTSGYGLVTNIINGGLECGIPGDARVNDRIGFFQRYTKLLNVDTGPNLDCAYQKPF* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2261 281 Gene3D Endochitinase, domain 2 126 184 - -
Pvu1g2261 281 ProSitePatterns Chitinases family 19 signature 1. 61 83 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pvu1g2261 281 SUPERFAMILY Lysozyme-like 40 281 IPR023346 -
Pvu1g2261 281 Gene3D - 47 281 - -
Pvu1g2261 281 Pfam Chitinase class I 43 275 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pvu1g2261 281 PIRSF Endochitinase 16 281 IPR016283 GO:0004568|GO:0005975
Pvu1g2261 281 CDD chitinase_GH19 44 275 - -
Pvu1g2261 281 ProSitePatterns Chitinases family 19 signature 2. 188 198 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pvu1g2261 281 PANTHER CHITINASE-RELATED 29 281 - -
Pvu1g2261 281 PANTHER OS05G0138200 PROTEIN 29 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2261 Pvu-Chr1 48122230 48123522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2261 39 281 Glycoside Hydrolase AT4G01700 74.074 1.63e-144 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2261 - - gmx:100784196 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2261 1 48122230 48123522 Pvu7g2148 7 44763578 44764807 PCT