Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2135 ATGCTTCCTCTCTCCCTTCTCAAAACTGCTCAAGGCCACCCCATGTTGGTGGAACTGAAAAATGGAGAGACTTATAACGGCCATTTGGTTAATTGCGATACATGGATGAACATCCATCTCCGAGAAGTCATTTGTACATCTAAAGATGGAGATAGATTTTGGAGAATGCCTGAATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTTCCTGATGAGGTTATTGACAAAGTTCAAGAAGAAACCAAGACCCGAGCAGATCGTAAACCACCTGGTGTGGGGCGTGGGAGGGGAAGAGGCAGAGAGGAAGGTGCTGGTGGACGTCAACCAAAAGGAATTGGGCGTGGCCTTGATGATGGTGGTGCCAAGGGAGCGGGAGGAGGTCGAGGCAAGGGTGGCCCTAGTGGAAAGCCTGGTGGAAACAGAGGGCGAGGTAGAGGCTGA 447 0.5011 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKTRADRKPPGVGRGRGRGREEGAGGRQPKGIGRGLDDGGAKGAGGGRGKGGPSGKPGGNRGRGRG* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2135 148 PANTHER SM-LIKE PROTEIN LSM4 1 138 - -
Pvu1g2135 148 Gene3D - 1 83 - -
Pvu1g2135 148 CDD LSm4 2 77 IPR034101 GO:0000398|GO:0000956
Pvu1g2135 148 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 1 138 IPR027141 GO:0006396
Pvu1g2135 148 MobiDBLite consensus disorder prediction 80 109 - -
Pvu1g2135 148 MobiDBLite consensus disorder prediction 80 148 - -
Pvu1g2135 148 SUPERFAMILY Sm-like ribonucleoproteins 3 129 IPR010920 -
Pvu1g2135 148 SMART Sm3 5 71 IPR001163 -
Pvu1g2135 148 Pfam LSM domain 6 70 IPR001163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2135 Pvu-Chr1 47049659 47052520 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2135 K12623 - ming:122087586 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2135 1 47049659 47052520 Pvu1g2135 1 47049659 47052520 ECH
Pvu7g1482 7 35662350 35664343 Pvu1g2135 1 47049659 47052520 PCT