Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2123 ATGGCTACGCTTTCTGCATGCTCTTCTCCTCCATGGCCAGACCCTAATCCCACCACCTCCCCCAATTCAGACCCAAACCCTAATTTCCTCCCCGACCAGTCCCAAACACTCGACTTCGAATCCCTCATGCCTCCGCAACCGAAATCGCCACCGCAATACCGCTCCCCCGCCGCATCGCCGCCGGGATTATCCCCGGAGACGCCCCCGTCGGTACTCCACGTCGCCTTCAACCAGGACCAGGCTTGCTTCTCCGCCGCCACCGACAACGGTTTCCGCATCTATAATTGCAACCCCTTCAGCGAACAATTCCGCCGCGAGTTCGACGGCGGCGGAATCGGACACGTCGAGATGCTCTTCCGCTGCAACATCATCGCCCTTGTCGGGGGCGGACCCCATCCCAAGTACTCGCCCAACAAGGTCATGATCTGGGATGACCACGAGGGCTGCTGCATCGGTGACCTATCACCCCGAGCCGCCGTCCGCAGTGTTCGGCTGCGCCGCGATCGGATTATCGTTGTCATCGAGCAGAAGATTTTGGTCTACAACTTCCAGGACCTCAGTCTCTTGCACCAGATTGAGACCTATCCCAACCCTAAGGGTCTCTGCGCGGTTTCGCAATTGTCTGATTCGCTCGTTCTCGCGTGCCCTGGGTTGCAGAAGGGTCAGATTCGTGTTGAGCATTACGCACAGAAGAAGACAAAGTTCATATCTGCTCATGATTCCAGAATTGCTTGTTTCGCTCTTACGCTTGATGGGCAGTTCATTGCTACCGCCAGCACCAAGGGCACGCTGATTCGAATTTTCGACACTGTTCAGGGCACGCTTCTTCAGGAAGTGAGAAGGGGTGCAAATGTTGCTGAGATCTATAGTTTGGCATTCTCTTCTACTGCTCGGTGGCTAGCAGTCTCAAGTGACAAGGGCACTGTCCATGTTTTCAGCCTTAAGGTTAATTCTAGCATCCCCGAGCAAGAAAAGCCTCAAAATTCATCCAATTCAGATGCTGCCATTACCCCATCTAACTCATCACGCTCCTTCACTAAATTTAAAGGAGTGTTACCCAAGTATTTCAATTCTGAGTGGTCAGTTGCTCAGTTTCGCTTACAAGAGGGTTCTCATTACACAGTTGCCTTTGGCCACGAAAAGAATACAGTCATAATTCTTGGCATGGATGGAAGCTTCTATAGATGCCAATTTGATCCAGTAAATGGAGGGGAGATGACTCAGCTGGAGTATCATAACTTTTTAAAGCCAGAACCAGAAACTGCCTTGTGA 1272 0.5212 MATLSACSSPPWPDPNPTTSPNSDPNPNFLPDQSQTLDFESLMPPQPKSPPQYRSPAASPPGLSPETPPSVLHVAFNQDQACFSAATDNGFRIYNCNPFSEQFRREFDGGGIGHVEMLFRCNIIALVGGGPHPKYSPNKVMIWDDHEGCCIGDLSPRAAVRSVRLRRDRIIVVIEQKILVYNFQDLSLLHQIETYPNPKGLCAVSQLSDSLVLACPGLQKGQIRVEHYAQKKTKFISAHDSRIACFALTLDGQFIATASTKGTLIRIFDTVQGTLLQEVRRGANVAEIYSLAFSSTARWLAVSSDKGTVHVFSLKVNSSIPEQEKPQNSSNSDAAITPSNSSRSFTKFKGVLPKYFNSEWSVAQFRLQEGSHYTVAFGHEKNTVIILGMDGSFYRCQFDPVNGGEMTQLEYHNFLKPEPETAL* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2123 423 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 25 419 - -
Pvu1g2123 423 SMART WD40_4 272 313 IPR001680 GO:0005515
Pvu1g2123 423 SMART WD40_4 61 95 IPR001680 GO:0005515
Pvu1g2123 423 SMART WD40_4 229 269 IPR001680 GO:0005515
Pvu1g2123 423 MobiDBLite consensus disorder prediction 321 341 - -
Pvu1g2123 423 MobiDBLite consensus disorder prediction 44 67 - -
Pvu1g2123 423 MobiDBLite consensus disorder prediction 1 70 - -
Pvu1g2123 423 Pfam WD domain, G-beta repeat 286 312 IPR001680 GO:0005515
Pvu1g2123 423 PANTHER WD REPEAT PHOSPHOINOSITIDE-INTERACTING-LIKE PROTEIN 25 419 - -
Pvu1g2123 423 SUPERFAMILY WD40 repeat-like 66 327 IPR036322 GO:0005515
Pvu1g2123 423 MobiDBLite consensus disorder prediction 10 24 - -
Pvu1g2123 423 MobiDBLite consensus disorder prediction 25 42 - -
Pvu1g2123 423 Gene3D - 59 395 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2123 Pvu-Chr1 46989620 46992624 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2123 K22991 - gmx:100781692 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2123 1 46989620 46992624 Pvu1g2123 1 46989620 46992624 ECH
Pvu1g2123 1 46989620 46992624 Pvu7g2022 7 43626334 43629370 ECH