Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2087 ATGACGGGGCAGGTCGTGGTCACCAGCGTTGGCGGATGCGGTGGTGGGAAGGGGCGGAGAGGCGGCGAAGAGGACCAAAACCCGGCGTCGCCTGTTGCGCTTCTGTTGGCGGCGCTGAGGAAATCGATGGTGGCGTGCAGTGTGGACAGTCCCGACGATGTAATCTCCGCTGTCCATCACCCCATGGAGATCGGATGGCCCACAAACGTCAAGCATGTTAGTCATGTCACTTTCGATCGCTTCAATGGGTTTCTGGGTCTTCCTCTTGAGTTGGAGGTTCATGTCCCCGCTCCTGTTCCCAGTGCTAGTGTTAGTGTGTTTGGCGTCTCAGCAGAATCAATGCAGTGTTCCTATGATTCAAAAGGAAACAGTGTTCCCACTATTCTACTGCTAATGCAAGAGCGATTATACTCACAGGGTGGCTTAAAGGCTGAAGGTATATTTCGCATAAATCCAGAGAACAGTGAAGAGGAGCATTTAAGGGAGCAGTTGAATAAGGGTATTGTGCCTGATGACATTGATGTCCACTGCTTGGCAGGCCTAATCAAAGCATGGTTCAGAGAGCTTCCTTCAGGAGTGCTAGATGGACTTTCCCCTGAGCAAGTTCTTGAGTGCAACACAGAAGAAGAGTCTGTTCAGCTTGTGAAGCAGCTAAAACCAACTGAGTCAGCCTTGCTCAACTGGGCTATTGATCTCATGGCTGATGTTGTAGCTGAAGAGGATTACAACAAAATGGATGCAAGAAACATTGCAATGGTTTTTGCTCCAAATATGACTCAGATGTCTGATCCATTAACTGCTCTGATGCATGCGGTCCAAGTGATGAATTTACTGAAGACCCTAATACTGAAGACACTTAGAAAACGTGAAGAAACAGCCGAAGGAGGATATTCGCCTATGTCATTTCGTTCATCTGATCGCCAATCAGAGGATGACTATGATAGTCAGCAAGAAATGGATACTAGTGGTGATGAATTGAGAGAGACCAAGTCAGAAGAAGAAGATGATGATGATGATCATAATGATGTTAACTATAGTCCTACCAGTGAAGAGGACGGGGAGGGTGATGCATCATCAGTAAGTGAGATAGTGGAATGCTTCTTGAAACGTTTGGATGAGAAAACAAAAAGATTATCGGAAGAACCTGTAGGGTATTTGCAAGAGAAGTTAGAGAGCCCCAAGAGTTTTTCTGTCTATAACTTGGAATCTGCTTTATCATTTACTGATATCAAAACTGAGAATTCCTGCTCAAGTTCCTCTTCCGAAGATGACTCAAGAACAACTCTTACTGCCGAGGAATCAAATGCTGACACAAGTAGTTCATCAATGGGAAGCACAAGCACCAATGACGTGGAGATGATCGATAAATTTACAGATCCTGGTTCTCTAGTTCCACTGTTTGCATCTAGTTAA 1413 0.4558 MTGQVVVTSVGGCGGGKGRRGGEEDQNPASPVALLLAALRKSMVACSVDSPDDVISAVHHPMEIGWPTNVKHVSHVTFDRFNGFLGLPLELEVHVPAPVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSEEEHLREQLNKGIVPDDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLECNTEEESVQLVKQLKPTESALLNWAIDLMADVVAEEDYNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLRKREETAEGGYSPMSFRSSDRQSEDDYDSQQEMDTSGDELRETKSEEEDDDDDHNDVNYSPTSEEDGEGDASSVSEIVECFLKRLDEKTKRLSEEPVGYLQEKLESPKSFSVYNLESALSFTDIKTENSCSSSSSEDDSRTTLTAEESNADTSSSSMGSTSTNDVEMIDKFTDPGSLVPLFASS* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2087 470 PANTHER RHO GTPASE ACTIVATION PROTEIN-RELATED 1 470 - -
Pvu1g2087 470 Gene3D Rho GTPase activation protein 96 288 IPR008936 GO:0007165
Pvu1g2087 470 MobiDBLite consensus disorder prediction 293 360 - -
Pvu1g2087 470 MobiDBLite consensus disorder prediction 411 453 - -
Pvu1g2087 470 MobiDBLite consensus disorder prediction 305 328 - -
Pvu1g2087 470 ProSiteProfiles Rho GTPase-activating proteins domain profile. 109 290 IPR000198 GO:0007165
Pvu1g2087 470 MobiDBLite consensus disorder prediction 411 470 - -
Pvu1g2087 470 CDD RhoGAP 126 276 - -
Pvu1g2087 470 SMART RhoGAP_3 123 286 IPR000198 GO:0007165
Pvu1g2087 470 CDD CRIB 62 92 - -
Pvu1g2087 470 Gene3D CRIB domain 59 95 IPR036936 -
Pvu1g2087 470 SUPERFAMILY GTPase activation domain, GAP 105 283 IPR008936 GO:0007165
Pvu1g2087 470 Pfam RhoGAP domain 126 260 IPR000198 GO:0007165
Pvu1g2087 470 Pfam P21-Rho-binding domain 63 91 IPR000095 -
Pvu1g2087 470 PANTHER MKIAA1688 PROTEIN 1 470 IPR044785 GO:0005096
Pvu1g2087 470 ProSiteProfiles CRIB domain profile. 64 77 IPR000095 -
Pvu1g2087 470 SMART PBD_5 64 98 IPR000095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2087 Pvu-Chr1 46698852 46702061 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2087 - K20642 gmx:100812700 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2087 1 46698852 46702061 Pvu1g2087 1 46698852 46702061 ECH
Pvu1g2087 1 46698852 46702061 Pvu7g1718 7 39878710 39882204 PCT