Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2080 ATGCTGAGCGTGCTACGCGTGCACCTCCCTTCTGATATTCCCATTGTAGGCTGTGAGCTCACGCCTTACGTGCTCCTACGCAGACCTGACAAGACCGTTACCACCGACGATGTCCCCGAAGCATCCCCGTTAGACGGCCATTTCTTGCTCTACAAGTGGTATCGAGTGCAGAGTGATAAAAAGGTTGCTGTTTGTAGTGTACATCCATCCGAGCAGGCTACACTGCAGTGCCTTGGTTGTTTAAAGGCTAAAATACCTGTTGGCAAAAGTTACCACTGCACTCCAAAGTGTTTTTCAGACGCATGGCAGCATCATCGTGTCTTACATGATCGTGCTGCAAGTTCAGGTAATGAAAATGGAAATGAGGAGGAAGAGTTATTTGGGCGATTTAATAATTCTGGATCTGGATCAATCAATACCACCTTATCTGCCTCTGCATCAAGTGCTAGCTTGACAAATGGGTCTGCACCTGTGTATCCAGCAGCCATTACACAACGAAGTGGTGGTGAAACTTGGTTTGAAGTTGGACGATCTAAGACATATACGCCAACAGCTGATGACATTGGCCATGTCCTTAAATTTGAGTGTGCTGTAGTTGATGCAGAGACTAAACTTACTGTAGGGCACGCTAGCACTCTACTAACTTCCCGTGTCATTCCTGCCCCCTCGCCTAGCCCACGCAGGCTAATACCTGTTGATGGGATGGGTCATTTGGATGCTGATGGGCGTATAACATCGTCAGGAACTTTTACTGTTCTATCATACAACATATTGTCTGATTCATATGCGTCAAGTGATCTATACAATTACTGCCCTTCATGGGCTCTTTCTTGGCTGTATCGCAGGCAAAATTTGTTACGAGAAATAGTCGTTTACCGTGCTGATATTATTTGTCTTCAGGAGGTTCAAAGTGATCATTATGAAGAATTTTTTTCTCCTGAACTGGACAAACATGGCTATTATGGACTTTACAAAAGGAAAACAAATGAGGTATATAGTGGCAACATGAATACAATTGATGGGTGTGCAACATTCTTCCGCAGAGACAGATTTTCACACGTGAAAAAATATGAGGTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCAACCACTCAGAAGAAAACGGCCTTGAATAGACTGGTTAAGGATAATGTTGCATTAATAGTTGTTTTAGAAGCAAAAGTTAACAATCAGCCTGTTGATAATCCTGGGAAGAGACAGCTTCTTTGTGTGGCAAATACACATGTAAATGTTCATCAAGATTTAAAGGATGTCAAACTCTGGCAGGTGCACACTCTTTTGAAAGGATTGGAGAAAATTGCGGCTAGTGCAGACATTCCAATGTTGGTTTGTGGGGACTTTAATTCAGTTCCAGGAAGTGCTCCTCATGCACTTCTTGCAATGGGAAAGGTAGATCCATCCCATCCTGATTTAGCAGTTGATCCACTTAATATATTGCGTCCTCACAGCAAGTTGGTTCACCAGTTGCCACTGGTCAGTGCTTATTCTTCCTTTGCAAGAACAGCTGGTCTTGGATTTGAGCAGCATAAACGGAGACTAGACAATGCAACAAATGAACCTTTATTCACTAATGTAACCAGAGATTTTATTGGCTCTCTAGATTACATATTTTACACAGCGGATTCATTGGTTGTGGAGTCATTGTTGGAGCTATTGGACGAGGAGAGTTTGCGGAAAGACACCGCACTTCCTTCTCCTGAATGGTCCTCTGATCATATAGCTCTGTTAGCCGAGTTTCGCTGCTGCAAGAATAGATCGAGGCGATGA 1803 0.4332 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKTVTTDDVPEASPLDGHFLLYKWYRVQSDKKVAVCSVHPSEQATLQCLGCLKAKIPVGKSYHCTPKCFSDAWQHHRVLHDRAASSGNENGNEEEELFGRFNNSGSGSINTTLSASASSASLTNGSAPVYPAAITQRSGGETWFEVGRSKTYTPTADDIGHVLKFECAVVDAETKLTVGHASTLLTSRVIPAPSPSPRRLIPVDGMGHLDADGRITSSGTFTVLSYNILSDSYASSDLYNYCPSWALSWLYRRQNLLREIVVYRADIICLQEVQSDHYEEFFSPELDKHGYYGLYKRKTNEVYSGNMNTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAVIPTTQKKTALNRLVKDNVALIVVLEAKVNNQPVDNPGKRQLLCVANTHVNVHQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVDPSHPDLAVDPLNILRPHSKLVHQLPLVSAYSSFARTAGLGFEQHKRRLDNATNEPLFTNVTRDFIGSLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCCKNRSRR* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2080 600 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 34 595 - -
Pvu1g2080 600 Gene3D Endonuclease/exonuclease/phosphatase 220 599 IPR036691 -
Pvu1g2080 600 Pfam Endonuclease/Exonuclease/phosphatase family 253 584 IPR005135 GO:0003824
Pvu1g2080 600 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 1-LIKE 34 595 - -
Pvu1g2080 600 SUPERFAMILY DNase I-like 246 594 IPR036691 -
Pvu1g2080 600 CDD Deadenylase_CCR4 252 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2080 Pvu-Chr1 46637579 46644741 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2080 K12603 - gmx:100808935 1124.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2080 1 46637579 46644741 Pvu1g2080 1 46637579 46644741 ECH
Pvu1g2080 1 46637579 46644741 Pvu7g2696 7 50033566 50041638 PCT