Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2017 ATGGCTCTTCCTTACATTATTCTCTTAACTCTAACTCTCATCTATCACGCTGCATTCACTTCCTCCACCTTCACTCCCAACACCATCACTCTCCCTCTCTCGCCTCTACTCACCAAACCCCAATCCTCGGATCCCTTCCACTCTCTCAAACTCGCCGCTTCAGCATCTCTAACCCGGGCCCACCACCTCAAACATCGCCTCAATGCCCCCTCCGCCGCCACAACCCAAGTCTACCCCAAAAGCTACGGTGGCTACTCCATAGATCTCAACTTCGGAACCCCACCCCAAACCTCCCCCTTCGTTCTCGACACAGGAAGTAGCCTCGTCTGGTTCCCCTGCACCTCCCGCTACCTCTGCTCCCATTGTCTCTTCCCAAACATCGACCCCACCAAAATCCCTACCTTCATTCCCAAAAACTCCTCCACCTCCAGACTTCTCGGTTGCAAAAACCCCAAATGCGGTTATCTCTTCGGCTCCGACCTTCAATCTCGCTGCCCCCAATGCAAACCCGATTCCCAAAACTGTTCCCTCACTTGTCCCCCCTACATTATCCAATACGGTTTGGGATCCACAGCGGGTTTCTTACTCCTCGACAATCTCAATTTCCCCGAAAAAATTGTTCCCCAATTTCTCGTAGGTTGCTCCATCCTCTCCATCCGCCAACCCTCCGGCATCGCCGGCTTCGGACGCGGCCAAGAGTCTCTCCCTGCGCAAATGGCACTCAAGAGATTCTCTTACTGCTTACTTTCCCACAACTTCGACGACTCCACGGAAAACAGCGACCTTGTTTTACAAATTAGCTCCACCGGCGACACCAAAACCAACGGCCTCAGCTACACGCCGTTTCACCCCAACCCCTCTGCCAACAACCCTGCGTTCCTGGAATATTACTATCTTAGCCTCCGCAAGGTCATCGTCGGGGGCAAGAACGTTAAGATTCCGTTAAGTTTTTTGGAGCCCGGCTCTGACGGTAACGGCGGCACCATCGTGGACTCTGGATCCACCTTCACGTTCATGGAACGACCCGCTTATGATTTGGTGGTCAAAGAGTTTGTGAAGCAGCTGGGGAATTATTCCAGGGCCGAGGACGTTGAGGCTCAATCTGGGTTAGGTCCCTGTTTTAATATTTCCGGCGCCAAGACCGTGAATTTCCCGAAGTTTACTTTGCAATTTAAAGGCGGCGCAAAAATGACGCTGCCGGTGGAAAATTATTTCTCGTTGATCGACGATTCGGAGGTGGTGTGTCTGACCATTGTCTCCGACGGTGGTGCCGGTCCGGCGACGACGTCCGGTCCCGCCATCATTTTGGGGAACTATCAGCAGCAAAATTTCCACATTGAATATGATTTGGAGAATGAGAGATTCGGATTCGGTCCTCAGAGTTGCAAAAGGAAAACTTAG 1401 0.5218 MALPYIILLTLTLIYHAAFTSSTFTPNTITLPLSPLLTKPQSSDPFHSLKLAASASLTRAHHLKHRLNAPSAATTQVYPKSYGGYSIDLNFGTPPQTSPFVLDTGSSLVWFPCTSRYLCSHCLFPNIDPTKIPTFIPKNSSTSRLLGCKNPKCGYLFGSDLQSRCPQCKPDSQNCSLTCPPYIIQYGLGSTAGFLLLDNLNFPEKIVPQFLVGCSILSIRQPSGIAGFGRGQESLPAQMALKRFSYCLLSHNFDDSTENSDLVLQISSTGDTKTNGLSYTPFHPNPSANNPAFLEYYYLSLRKVIVGGKNVKIPLSFLEPGSDGNGGTIVDSGSTFTFMERPAYDLVVKEFVKQLGNYSRAEDVEAQSGLGPCFNISGAKTVNFPKFTLQFKGGAKMTLPVENYFSLIDDSEVVCLTIVSDGGAGPATTSGPAIILGNYQQQNFHIEYDLENERFGFGPQSCKRKT* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2017 466 Gene3D Acid Proteases 264 466 IPR021109 -
Pvu1g2017 466 CDD pepsin_A_like_plant 84 462 IPR034161 -
Pvu1g2017 466 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 100 111 IPR001969 GO:0004190|GO:0006508
Pvu1g2017 466 PANTHER BNACNNG47670D PROTEIN 8 462 - -
Pvu1g2017 466 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Pvu1g2017 466 PRINTS Pepsin (A1) aspartic protease family signature 328 339 IPR001461 GO:0004190|GO:0006508
Pvu1g2017 466 PRINTS Pepsin (A1) aspartic protease family signature 434 449 IPR001461 GO:0004190|GO:0006508
Pvu1g2017 466 SUPERFAMILY Acid proteases 80 462 IPR021109 -
Pvu1g2017 466 Pfam Xylanase inhibitor C-terminal 297 458 IPR032799 -
Pvu1g2017 466 Pfam Xylanase inhibitor N-terminal 85 262 IPR032861 -
Pvu1g2017 466 Gene3D Acid Proteases 61 259 IPR021109 -
Pvu1g2017 466 ProSiteProfiles Peptidase family A1 domain profile. 85 458 IPR033121 -
Pvu1g2017 466 PANTHER OS07G0603500 PROTEIN-RELATED 8 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2017 Pvu-Chr1 46050524 46052638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g2017 54 464 Miscellaneous Gene Families AT1G77480 23.884 3.45e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2017 - - gmx:100805927 784.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2017 1 46050524 46052638 Pvu1g2017 1 46050524 46052638 ECH
Pvu1g2017 1 46050524 46052638 Pvu7g2773 7 50747779 50749481 PCT