Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g2008 ATGACGCTTGGCTCTGCAGGATCCAGTGTCGTGGTTCCAAGGAACTTCAGATTGCTGGAGGAACTTGAAAAGGGAGAAAAGGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGATATTTACATGCGCTCTTGGACTGGCACTATTATTGGCCCCTATAATACTGTACATGAAGGGAGAATTTATCAATTGAAGTTGTTTTGTGATAAAGATTACCCAGAAAAGCCTCCAAGTGTTCGGTTTCATTCACGGATCAATATGACTTGTGTTAATCATGAAACTGGAGTGGTTGAATCAAAGAAATTTGGTCTTCTTTCAAATTGGCAACGAAAGTTTACCATGGAAGATATATTGACCCAACTGAAGAAGGAAATGGCAGCTTCACATAACCGTAAGCTTATCCAGCCTCCTGAAGGTACTTGCTATTAG 441 0.4104 MTLGSAGSSVVVPRNFRLLEELEKGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPYNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVESKKFGLLSNWQRKFTMEDILTQLKKEMAASHNRKLIQPPEGTCY* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g2008 146 Pfam Ubiquitin-conjugating enzyme 43 132 IPR000608 -
Pvu1g2008 146 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 9 140 - -
Pvu1g2008 146 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 13 146 IPR000608 -
Pvu1g2008 146 SMART ubc_7 16 144 - -
Pvu1g2008 146 Gene3D Ubiquitin Conjugating Enzyme 3 146 IPR016135 -
Pvu1g2008 146 PANTHER - 9 140 - -
Pvu1g2008 146 SUPERFAMILY UBC-like 11 146 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g2008 Pvu-Chr1 45977691 45981863 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g2008 K10704 - gmx:100789495 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g2008 1 45977691 45981863 Pvu1g2008 1 45977691 45981863 ECH
Pvu1g2008 1 45977691 45981863 Pvu7g2782 7 50842155 50844938 PCT