Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1997 ATGAAGGATGGCTGCGACTATGCACGCAAAAAGCTGGACAAGCTCAACATCATTAAGATCTGCGAAGAGATTCTGAACCCATCGGTTCCCATGGCTCTTAGACTTTCTGGAATTCTCATGCGACTTGATAGTGTGGGTTTACCCTTCACTAATAACGAAGCAAGAGAGGACCAAGATCCATCTAAATTTCATCAAGCTGACGTAGAGAATATTACCTTATTTGAACGCTTTGAAACATTCCAAGCTAATGCGGATCCATTAAATTGCTTTGAGAGGTTTGATATTGAAGGAGATGAGGAAACACAGGTAAATATAACTTCTAGAGATCAAATTCCAAGCATGCTTATACCCTCCCTACCTCATGAAGACCAGCCCACCAGAGCTGATATGTTTCAAGACCTTCCGGGACAACAGAACAATCAACAACCTAATGAAGCCGTGACACCTAGACAGGAACCTAGAAGGCGAGGACCAAATAAAAGGAAAAGAAGAGAAAGATTGGGTATCGAAATGGATTATGAGCAAACCATTCTTCCTGTTCACATATACCAACACTGGCTTCAGGATGCTTCTGATATTGTCTCGCGAAGGGGAAGAAAGAAAAAGCAAACCAATGTTTTGTCATCAACAAAGATAGCCAACCTCATGAAGCTGCCACCTGTTGCGCTAATTGGTGATTCATTTACAGCTGAAAATAATAATATATATTATCCAGCACCTATTCTTGACTTATGGATTAAGAGCATTCAACCACCCCACGATTCACCTTCAGAAAGGATTTCAGCCTACCATCCTCCAGAACCATCATTTTCATCGCCTCAAGGAGTACACAATGGAGATTTCATGCAATTTGCTAGTCTATTGAGAGGGCATGAATCTACTCCGCATGTCTCATCAAGGAAAGCCGGAGACAGTGCACATTCCTTTCCAAGACCAGCGTCTGAACATGGTCCTGCCTCACATTCAGACTTTGATTCGGGAAGATTAAAAAACAGAAGGTATTCTCCATCAGCAAACAGCAGTGGAGGTTTTGAGCCACTAGTGGAGGATGTAAATTTCAAGTTAGCTAGGCTTTATGAAGATGGTCCCACGCCTGATCAAGAACTTCTCGTGGAAACAGGACCCACGCAAACGCAAGTTAACATCAATCATCCCAGTGACAGGATAACCTATTCCATACAAGCACAATTGAAGGCACACTTTGACACGCCTGGAACTCCTCCCGTTGAATCCCTCCATAATCTAGCTGCTGGAATGACACGAACATCGGCATCACAACTTTTCTATCAAATTTGTGTTCTTGCTTCCGGTGATGCGTTGAAAGTGGAGCAAAAGGTGCCCTATGGAGATATTCTCTTCTCTAGAGGATTAAAGATGTGA 1380 0.4283 MKDGCDYARKKLDKLNIIKICEEILNPSVPMALRLSGILMRLDSVGLPFTNNEAREDQDPSKFHQADVENITLFERFETFQANADPLNCFERFDIEGDEETQVNITSRDQIPSMLIPSLPHEDQPTRADMFQDLPGQQNNQQPNEAVTPRQEPRRRGPNKRKRRERLGIEMDYEQTILPVHIYQHWLQDASDIVSRRGRKKKQTNVLSSTKIANLMKLPPVALIGDSFTAENNNIYYPAPILDLWIKSIQPPHDSPSERISAYHPPEPSFSSPQGVHNGDFMQFASLLRGHESTPHVSSRKAGDSAHSFPRPASEHGPASHSDFDSGRLKNRRYSPSANSSGGFEPLVEDVNFKLARLYEDGPTPDQELLVETGPTQTQVNINHPSDRITYSIQAQLKAHFDTPGTPPVESLHNLAAGMTRTSASQLFYQICVLASGDALKVEQKVPYGDILFSRGLKM* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1997 459 MobiDBLite consensus disorder prediction 292 343 - -
Pvu1g1997 459 Pfam Conserved region of Rad21 / Rec8 like protein 409 459 IPR006909 -
Pvu1g1997 459 PANTHER SISTER CHROMATID COHESION 1 PROTEIN 1 41 459 - -
Pvu1g1997 459 PANTHER SISTER CHROMATID COHESION 1 PROTEIN 1 8 41 - -
Pvu1g1997 459 Gene3D Structural maintenance of chromosome 1. Chain E 386 458 IPR023093 -
Pvu1g1997 459 Pfam N terminus of Rad21 / Rec8 like protein 8 40 IPR006910 GO:0005515
Pvu1g1997 459 MobiDBLite consensus disorder prediction 131 148 - -
Pvu1g1997 459 MobiDBLite consensus disorder prediction 253 276 - -
Pvu1g1997 459 PANTHER SCC1 / RAD21 FAMILY MEMBER 8 41 IPR039781 GO:0007062|GO:0008278
Pvu1g1997 459 PANTHER SCC1 / RAD21 FAMILY MEMBER 41 459 IPR039781 GO:0007062|GO:0008278
Pvu1g1997 459 MobiDBLite consensus disorder prediction 102 168 - -
Pvu1g1997 459 SUPERFAMILY "Winged helix" DNA-binding domain 391 456 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1997 Pvu-Chr1 45857040 45861177 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1997 K06670 - gmx:100791405 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1997 1 45857040 45861177 Pvu7g2241 7 45689101 45694794 PCT