Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1904 ATGCGGGGCTGTGTTTCCCTGTCGCTCGCGTTAGCCACCGTCGTGTTGGCGGCGACGATGGTGCACGGCGGTTTGACGGGGACATTTCTTCATCTGGAACGGGCCATTCCTCTGAACCAACGAGTGGAGTTAGAGGTGCTGAGAGCTCGCGACAGAGAACGCCACGGTCGAATCTTGCAAGGTGGCTTTGGTGGCGTTGTCAACTTCGCCGTCCAAGGAACCTCCGATCCTTACTTCGTTGGGTACGGGCTGTATTTCACGAAAGTGAAGTTGGGATCTCCTGCGAAAGAGTTTTACGTTCAGATTGATACTGGAAGTGACGTATTGTGGCTGAATTGCATGACTTGCAGTAATTGCCCGCAATCTAGTGGGCTAGGGATTGTGCTGGATTTCTTTGACACGGCCAGCTCATCCACTGCTGCGTTTATTTCCTGCGCTGATCCAATATGTTCTTATGCTGTTCAAACTGCGACAAGTGAATGCTCTTCTCAGGCTAATCATTGCAGCTACACTTTTCAGTATGGGGATGGAAGTGGGACAACTGGTTATTATGTTTCTGATACGATGTATTTTGACACAGTCCTGGGACAGGAATTGGTTTCTAACTCTTCATCTACCATCGTTTTTGGGTGTAGCACCTACCAGTCTGGGGATTTGACCAAAACAGACAAAGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGTGCTCTATCTGTTATATCACAATTGTCATCACAGGGTGTGACACCCAAAGTGTTCTCTCATTGCCTAAAAGGAGCAGACAATGGAGGAGGTTTGCTAGTTCTCGGGGAAATTTTGGAGCCAAGTATTGTTTATAGCCCACTTGTCCCATCACAGCCTCATTACAACTTAAATCTTCAGAGTATTGCTGTGAATGGACAACTTCTCCCAATTGATTCAGGTGTATTTGCAACAACTAATAATCGAGGAACTATAGTTGACACTGGAACAACATTGGCATACCTTGTTCAAGAAGCATACAATCCTTTTGTCGATGCTATAACTGCTGCTGTGTCACAGTTCTCCAAACCCATTATTTCAAAAGGAAACCAGTGTTATCTGGTATCAAACAGTGTAGGTGATATATTTCCTCAAGTCAGTTTAAACTTCATGGGTGGGGCATCTATGGTTTTAGATCCAGAACATTACCTCATGCATTATGGTTTCCTTGATGCTGCTGCAATGTGGTGCATTGGCTTCCAAAAAGGGGAGCAGGGATTCACAATTTTAGGAGATCTTGTCCTAAAAGATAAGATATTTGTATATGACTTAGCTAATCAACGAATTGGATGGGCGAATTATGACTGCTCATTGGCTGTAAACGTCTCTATGGCTACGAGCAAGAGCAAGGATGCATACATAAACAATTCAGGACACATCAGTGAGGGCTGCTCCCACATAGGCACTTTCTCCAAGTTGCTAGCAGCAGGCATTGCTGCTTTCCTTGTGCACATAGTTTTCATGGAGTTCCCATTTTTGTAA 1503 0.4511 MRGCVSLSLALATVVLAATMVHGGLTGTFLHLERAIPLNQRVELEVLRARDRERHGRILQGGFGGVVNFAVQGTSDPYFVGYGLYFTKVKLGSPAKEFYVQIDTGSDVLWLNCMTCSNCPQSSGLGIVLDFFDTASSSTAAFISCADPICSYAVQTATSECSSQANHCSYTFQYGDGSGTTGYYVSDTMYFDTVLGQELVSNSSSTIVFGCSTYQSGDLTKTDKAVDGIFGFGPGALSVISQLSSQGVTPKVFSHCLKGADNGGGLLVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQLLPIDSGVFATTNNRGTIVDTGTTLAYLVQEAYNPFVDAITAAVSQFSKPIISKGNQCYLVSNSVGDIFPQVSLNFMGGASMVLDPEHYLMHYGFLDAAAMWCIGFQKGEQGFTILGDLVLKDKIFVYDLANQRIGWANYDCSLAVNVSMATSKSKDAYINNSGHISEGCSHIGTFSKLLAAGIAAFLVHIVFMEFPFL* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1904 500 ProSiteProfiles Peptidase family A1 domain profile. 85 439 IPR033121 -
Pvu1g1904 500 Gene3D Acid Proteases 68 271 IPR021109 -
Pvu1g1904 500 CDD pepsin_A_like_plant 85 443 IPR034161 -
Pvu1g1904 500 PANTHER ASPARTYL PROTEASES 5 462 IPR001461 GO:0004190|GO:0006508
Pvu1g1904 500 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 462 - -
Pvu1g1904 500 Gene3D Acid Proteases 272 449 IPR021109 -
Pvu1g1904 500 Pfam Xylanase inhibitor C-terminal 288 439 IPR032799 -
Pvu1g1904 500 SUPERFAMILY Acid proteases 80 445 IPR021109 -
Pvu1g1904 500 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Pvu1g1904 500 PRINTS Pepsin (A1) aspartic protease family signature 318 329 IPR001461 GO:0004190|GO:0006508
Pvu1g1904 500 PRINTS Pepsin (A1) aspartic protease family signature 415 430 IPR001461 GO:0004190|GO:0006508
Pvu1g1904 500 Pfam Xylanase inhibitor N-terminal 85 270 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1904 Pvu-Chr1 44854383 44860645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1904 83 444 Miscellaneous Gene Families AT1G44130 27.676 2.99e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1904 - - gmx:100804147 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1904 1 44854383 44860645 Pvu1g1904 1 44854383 44860645 ECH
Pvu1g1904 1 44854383 44860645 Pvu7g2321 7 46556014 46561163 PCT