Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1878 ATGAGTTCATCCTCAGCTCAGAGCAGTGGCTATGATCTCTCTTTCAAGATCTTGTTGATCGGAGATTCTGGGGTGGGAAAAAGTAGCCTACTTGTCAGCTTCATTTCAAGTTCTGTTGAAGATCTTTCCCCCACCATTGGTGTTGATTTTAAGATCAAAACGCTCGTAGTAGGTGGCAAGAGATTGAAATTAACGATTTGGGATACTGCTGGGCAGGAAAGGTTCAGGACTCTAACCAGCTCTTACTATAGAAAAGCACAAGGAATCATTCTCGTTTATGATGTTACGAGGCGAGAAACCTTTACAAACTTATCAGAAGTGTGGTCTAAGGAAGTGGAACTCTACTCAACTAATCAAGATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAGATACTGAAAGGGCTGTGAGCAGAGAAGAGGGTTTATCCCTTGCCAAAGAATTGGGGTGTTTGCTTCTTGAATGCAGTGCTAAAACTCGGGAAAATGTGGAGCAGTGCTTTGAGGAACTTGCTCTAAAGATAATGGAAGCCCCCAGTCTTTTGGAAGAGGGATCAACAGCAGTTAAAAGGAGTGTTTTAAAACAGAAACAAGAGCCCCAAGCTTCCCAAAATAGTGGTTGTTGCTCTTAA 636 0.4214 MSSSSAQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLSPTIGVDFKIKTLVVGGKRLKLTIWDTAGQERFRTLTSSYYRKAQGIILVYDVTRRETFTNLSEVWSKEVELYSTNQDCVKMLVGNKVDRDTERAVSREEGLSLAKELGCLLLECSAKTRENVEQCFEELALKIMEAPSLLEEGSTAVKRSVLKQKQEPQASQNSGCCS* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1878 211 PANTHER DRAB5-RELATED 1 211 - -
Pvu1g1878 211 ProSiteProfiles small GTPase Ras family profile. 6 211 IPR001806 GO:0003924|GO:0005525
Pvu1g1878 211 Pfam Ras family 16 177 IPR001806 GO:0003924|GO:0005525
Pvu1g1878 211 CDD Rab18 15 176 - -
Pvu1g1878 211 SMART arf_sub_2 1 180 - -
Pvu1g1878 211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 198 IPR027417 -
Pvu1g1878 211 PRINTS Transforming protein P21 ras signature 15 36 - -
Pvu1g1878 211 PRINTS Transforming protein P21 ras signature 37 53 - -
Pvu1g1878 211 PRINTS Transforming protein P21 ras signature 55 77 - -
Pvu1g1878 211 PRINTS Transforming protein P21 ras signature 119 132 - -
Pvu1g1878 211 PRINTS Transforming protein P21 ras signature 154 176 - -
Pvu1g1878 211 PANTHER SMALL MONOMERIC GTPASE-RELATED 1 211 - -
Pvu1g1878 211 ProSiteProfiles small GTPase Rho family profile. 8 179 - -
Pvu1g1878 211 ProSiteProfiles small GTPase Arf family profile. 8 177 - -
Pvu1g1878 211 SMART ran_sub_2 20 210 - -
Pvu1g1878 211 ProSiteProfiles small GTPase Rab1 family profile. 10 211 - -
Pvu1g1878 211 SMART rab_sub_5 15 179 - -
Pvu1g1878 211 Gene3D - 8 210 IPR027417 -
Pvu1g1878 211 TIGRFAM small_GTP: small GTP-binding protein domain 15 171 IPR005225 GO:0005525
Pvu1g1878 211 SMART ras_sub_4 12 179 - -
Pvu1g1878 211 SMART rho_sub_3 17 180 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1878 Pvu-Chr1 44588002 44591438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1878 2 179 EF-hand Containing Proteins AT5G27540 27.933 2.46e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1878 K07910 - gmx:100799887 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1878 1 44588002 44591438 Pvu1g1878 1 44588002 44591438 ECH
Pvu1g1878 1 44588002 44591438 Pvu7g1441 7 34520501 34521750 ECH
Pvu1g1878 1 44588002 44591438 Pvu7g1562 7 37373231 37376791 PCT