Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1871 ATGTTTAAGCGAATCATGAAGGGAGGGCAGAAGAAGCCCTCCAAGACGGACCCGAGCGATCCATCCTCCTTCGGTCCGACGGCGACAGCCGCTGCTCCAGCGGTGGTTGTGCCGCCGCCTTCGGGGACCATAGAGCCGCTGCCTCTGTTCGTCGACGTGGCTGTGTCGGAGCGGCAGAACCTCTTTATCCGGAAGCTCCAGATATGCTGCCACGTGCTGGACTTCTCGGACACGCTGAAGAGCATTCGCGAGAAGGAAATCAAGAGACAGACGCTGATGGAGCTCGTGGATTTCATCCAATCGGGTTCGGGGAAGATAACGGAGACGTGCCAGGAGGAGATGATCAAAATGGTGTCGACCAATATCTTCCGGTGCCTCCCGCCGGCGTCGCACGAGAACACTGGCCAGGAAGCCACCGATCCGGAGGAGGAGGAGCCGTGCCTCGAGCCCGCGTGGCCGCACCTTCAGCTCGTCTACGAGCTTCTCCTCAGATACATCGTTTCATCTGATACTGACACAAAGGTTGCGAAACGGTACATTGATCATTCTTTTGTCCTCAAACTGCTTGATTTGTTTGACTCTGAGGACCCCCGTGAGCGTGAGTACTTAAAAACCATATTGCATCGCGTGTACGGGAAATTCATGGTTCATCGCCCCTTTATTAGGAAGGCCATTAACAACATATTTTTTCGGTTTATATATGAGACGGAGCGGCATAGCGGTATTGGGGAGCTTCTTGAGATTCTGGGGAGCATTATTAATGGCTTTGCTTTGCCGATGAAAGAAGAACACAAGCTGTTTCTATCGAGGGCGCTTCTGCCTCTGCATAAGCCCAAGCCGGTTTCGGTGTATCACCAGCAGTTGTCGTATTGCATTGCGCAGTTTGTGGAGAAGGATTTCAAGCTCGCGGATGCAGTTATTAGGGGCTTGTTGAAGTATTGGCCCGTGACTAATTGCCAGAAGGAGGTTCTCTTCCTTGGGGAACTGGAGGAGGTGCTGGAGGCCACGCAAGCTGCGGAATTCCAACGCTGCATGGTCCCTCTGTTTAGACAGGTTGCCCGCTGCCTCAATAGTTCTCACTTTCAGGTTGCAGAACGAACTCTCTTTTTGTGGAATAATGAGCACATTGTCAGCTTAATTGCCCAAAACAGGACTGTAGTATTACCCATATTATTTGAAGCTTTGGAGAAAAATATCCAGAGTCATTGGAACCAGGCTGTTCACGGGCTGACCGTGAACGTTCAGAAAATGTTCCTAGAAATGGATGCAGAATTATTTGAAGAGTGTCAGAGACAGTATGCAGAGAGGCAGGCTAAAGCAAAAGATTTAGAAGAGCAGCGGGAATTGAATTGGAAAAGACTGGCAGATGCAGCTGCACAGAATGGGGTGGATATGGTCACAGCTTAG 1407 0.5089 MFKRIMKGGQKKPSKTDPSDPSSFGPTATAAAPAVVVPPPSGTIEPLPLFVDVAVSERQNLFIRKLQICCHVLDFSDTLKSIREKEIKRQTLMELVDFIQSGSGKITETCQEEMIKMVSTNIFRCLPPASHENTGQEATDPEEEEPCLEPAWPHLQLVYELLLRYIVSSDTDTKVAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRVYGKFMVHRPFIRKAINNIFFRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLSRALLPLHKPKPVSVYHQQLSYCIAQFVEKDFKLADAVIRGLLKYWPVTNCQKEVLFLGELEEVLEATQAAEFQRCMVPLFRQVARCLNSSHFQVAERTLFLWNNEHIVSLIAQNRTVVLPILFEALEKNIQSHWNQAVHGLTVNVQKMFLEMDAELFEECQRQYAERQAKAKDLEEQRELNWKRLADAAAQNGVDMVTA* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1871 468 PIRSF PP2A_B56 10 466 IPR002554 GO:0000159|GO:0007165|GO:0019888
Pvu1g1871 468 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 467 IPR002554 GO:0000159|GO:0007165|GO:0019888
Pvu1g1871 468 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 47 458 IPR002554 GO:0000159|GO:0007165|GO:0019888
Pvu1g1871 468 Coils Coil 426 446 - -
Pvu1g1871 468 SUPERFAMILY ARM repeat 59 440 IPR016024 -
Pvu1g1871 468 MobiDBLite consensus disorder prediction 1 27 - -
Pvu1g1871 468 PANTHER PROTEIN PHOSPHATASE 2A REGULATORY B SUBUNIT FAMILY PROTEIN 1 467 - -
Pvu1g1871 468 Gene3D - 55 457 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1871 Pvu-Chr1 44508319 44515229 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1871 K11584 - gmx:100798308 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1871 1 44508319 44515229 Pvu1g1871 1 44508319 44515229 ECH
Pvu1g1871 1 44508319 44515229 Pvu7g1554 7 37247703 37253705 PCT