LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu1g1839	ATGAAATCAAAGAGTAAAATGGAGGCAGAGACATTGAGTCCCAACCATCCTCCTAGCTTTCTTCGTCAGTCACTTCCTGCTATTGTACCTATGCTTTTGATGTCTACAGGATATGTTGACCCTGGAAAGTGGGTAGCGACCGTTGAAGGTGGGGCACGGTTTGGGTTTGATCTGATGGCTTTCATGCTTATTTTCAATTTTGCTGCTATATTCTGTCAGTACATATCTGCAAGGATTGGCGTAGTTACTGGAAAGAATCTAGCTCAGATTTGCAGTGATGAGTATGATACATGGACATGTATGCTCCTTGGAGTTCAAACAGAACTTTCAGTGATAATGCTAGACCTTAACATGATCTTGGGCATGGCACAAGGGTTAAATCTTATTTTTGGGTGGGACTTGTTCAGTTGTGTCTTTTTAGCTGCCACTGGTGTTGTTTTTCACATACTTCTTGCAGTCTTACTTGACATTGAGAAGGCAAAATTCCTAGGCCAGTTTGTTGCAGGCTTTGTATTGGTTTCTTTTATACTTGGAATGCTTATCAATCAACCGGAAATTCCATTTTCTATGAATGGAATACTAATAAGATTGAGTGGGGAGAGTGCATTTGTGCTAATGAGTCTTCTAGGAGCAAATCTTGTACCTCACAACTTTTACCTTCATTCCTCTATTGTACAGTGGCATCAAGGACCGGCAAGCATTTCAAAGAATGCTTTGTGTCATAACCATTTTTTGGCCATATTATGTGTTTTCAGTGGTCTTTATTTGGTAAATAATATGCTGATGACCACCTCGGCAAATGAGTTCTACAGTACCGGGCATGTTCTGCTAACTTTCATGGATGCATTGTCACCAATGGAACAGGTCTTACGTAACCCAATGGCTCTACTTGGGTTTTTACTCCTTTTGTTTCTTGCAAATCAAATCACAGCATTAACTTGGAGTTTAGGTGGAGAAGTAGTAGTGCAAGGTTTCTTAAAATTGGATATTCCGGGTTGGCTTCATTATGCTACAATTAGAGTGATTACTGTTTCGTCTGCCCTTTATTTTGTCTGGAGTTCAGGAGCTGAAGGGATGTATCAGCTACTATTATTCACTCAAGTTTTGGTAGCTCTACAACTTCCATCTCAAGTGATCCCCCTTTTTCGTGTTGCTACATCTAGATCAATAATGGGTGTACACAAGATTTCCCAGTTTCTGGAACTTTTGGCATTAATCATATTCATTGGGATGCTTGGCTTGAATATTGTATTTGTGGTAGAAATGATGTTTGGAAATAGTGATTGGGCTAGTGATTTGAGATGGAATGTGGGGAGTGGTGTATCTATCTCGTATGTAGTTCTTCTAACAACTTCTTTTTCATCGTTATGTTTTATGCTTTGGTTAGCTGCCACACCTTTGAGATCTCTTAGTGTTCGATTAGATTCTAAGATATGGAATTGGGATATGCCAAAGACTCTGCCAAATCCACCAATTATTGGCGATAAATCTTATTTAACTGAAACAAGGTGTCGAGAAGATGCATCTATGCAGGTGGAGGAACCCACACCAGCTGTAGCAAAGACCTTGGAGTACCCAGATGTATCATATCCAAGTTTTCATCCTGCTCTACCTAAATCTGTAATGGAACCTGAACTCCATGTGAATGTTGCAAGGGCGAATCATTCTGCTATGTTGGCTTCCACATCAGAGTCAGAAGTTGTAACAACTGTGATTAATAAGATTTCCAATTCTCAATTGGAAGACACCAAAAGTATAACAATGGAAACAAATAACCCGATTGAGAAAACTATGGAAGTTGAAGGAGATTCAAATGTTGAAAGGGATGATGATGATGATGATGGCGATTCATGGGAAGCTGAAGAACCTTCTGGATTAGTGTTAGCAAATGTACCATCTTCAACATCAGATGGCCCTGCATCATTCAGGAGTCTTAATGGCAAAACTGATGAAGGAGGGAATAGCTTTGGAAGTCTTTCGAGAATAGAAGGCTTAGGGCGTGCAGCAAGGCGTCAGCTAGCTTTTGTTCTTGATGAATTCTGGGGACAACTATTTGATTTCCATGGCCATATAACTCAGGAAGCAAAGGCTAATAAAATTGACCTTTTGCTGGGAGTGGGTGTCGATTTAAGACCTACCAGTTCTTTGCAAAAAGTGGATGCATCTAGAAAGGACTATTCTGAATACTCAGGATCTGTAAGAGGTAGAGCTTCTAACACTTTAGCGAACTCTGATCTATATGATTATTCCAAGCAGCCTATGATGCAAAGTAATTCAGAGTCTTATGGTCTCCAAAGGAGTACTTCCTCAATGCGGACAGATCCCATCCAATTAGTGGATGCATATGTGCAGAACTCGACCCACAATCTCCTCGATTCGGGTGAGAGGCGCTATTTCAGTGTGCGTAATCTACATTCATCAGAGGCTCGGGATTATCAACCAGCTACCATACATGGTTATCAGACTGCATCCTATCTTAGTCGACTTGGTAAAGACACAGATTCTGCTAACTTAAATGGTCCAGTGGACTTGTCATCACTGAAATCCCCTTCCATAGTTAATGCAAAGTACAGGGATTCTCTTGCATTTGCTTTGGGGAAAAGGTTGTGTAGTGGTCAAAGTGTAGGCCAACCCCCAGGGTTCCCAAAAGTTGCTATCTCTAGAGATTGCCAATTACAATCTGAGAGGTCTCATTACGATGTTTGCTCTTCTGGATCTGCAGATAATTCAGTCAACTCAGTTAATACTAAAAAGTACCACAGTTTGCCAGACATTTCAGGATACTCCATCCCCCACAGGTCGGCTTATGTGTCTGATAAAAATGCTCCATCGGATGGTTCTGCCGGATATGGATCTTATGCTAGTAGGACGTGTTATCAAAGATTACCATATTCAAATTCTGGAACAAGAACAGGAGGTCATTTGACCTTCAATGAACTCTCTTCATCTAAAGCTTACAACGAGGCACTCTCTTCACAGTTGAACTCTGGTTTTGATACTGGATCCCTCCGATCTAGACTGCCTTGTGAGCAGTTTGGGCCTGAGAAAAATCGTAATATTGCAATGGAAGGTGTCGGAAGTAGGCCTAAGGCAATTGTTCAAGAAACTACATTTGTGGATATGGAGAGGAAACTTCTTCTGTCAGTTAGACTTTGCATTGTGAAGCTCTTAAAATTGGAGGGGTCTGATGGGTTGTTTAGACAGAATGGTGGAGCTGACGAGGATCTGATAGATTCTGTCGCTGTAAGGGAGAAGGTCGTTTGTGAATTAGAAACTAGGGAGACGAGTCAAGTCAATCATGTGGGTGAAGCTCAGTATTGTATTGCTGATAGGAAACTTAGTTTTTCTTCATCTCCAGTTCCTAATTGCGGAGAGGGATGTGTATGGAGAACTGATTTAATAATAAGCTTTGGGGTGTGGTGTATCCACAGTATTCTTAACCTTACACTTGTGGAAAGCCGGCCAGAGCTTTGGGGGAAATACACGTACGTTCTCAATCGCCTCCAGGGCATCATTGATCCGGCTTTCTTTAAGCCTCGTAGTCCCTTGGCCCCATGCTTTTGCCTTCAAGTTCTAACGGCGCATCAGCGAAAGTTAAACCCCCATCTTTCGAATGAGATGATACTCCCAACTGCTAAACCAGGCCGGGGCAAATGCACAACTGCATCAGGGTTGCTTGAACTTATCAAGGATGTGGAGCTTGCGATCTCTTGCAGGAAAGGACGTACAGGAACTGTTGCAGGTGATGTGGCTTTCCCTAAGGGGAAGGAAAATTTGGCGTCTGTTCTCAAACGGTACAAGCGGAGGTTATCTAACAAGCCAGCGGGCACTAATGAAGGTACAGGCTCGCGCAAGACCCCACGTTAG	3867	0.421	MKSKSKMEAETLSPNHPPSFLRQSLPAIVPMLLMSTGYVDPGKWVATVEGGARFGFDLMAFMLIFNFAAIFCQYISARIGVVTGKNLAQICSDEYDTWTCMLLGVQTELSVIMLDLNMILGMAQGLNLIFGWDLFSCVFLAATGVVFHILLAVLLDIEKAKFLGQFVAGFVLVSFILGMLINQPEIPFSMNGILIRLSGESAFVLMSLLGANLVPHNFYLHSSIVQWHQGPASISKNALCHNHFLAILCVFSGLYLVNNMLMTTSANEFYSTGHVLLTFMDALSPMEQVLRNPMALLGFLLLLFLANQITALTWSLGGEVVVQGFLKLDIPGWLHYATIRVITVSSALYFVWSSGAEGMYQLLLFTQVLVALQLPSQVIPLFRVATSRSIMGVHKISQFLELLALIIFIGMLGLNIVFVVEMMFGNSDWASDLRWNVGSGVSISYVVLLTTSFSSLCFMLWLAATPLRSLSVRLDSKIWNWDMPKTLPNPPIIGDKSYLTETRCREDASMQVEEPTPAVAKTLEYPDVSYPSFHPALPKSVMEPELHVNVARANHSAMLASTSESEVVTTVINKISNSQLEDTKSITMETNNPIEKTMEVEGDSNVERDDDDDDGDSWEAEEPSGLVLANVPSSTSDGPASFRSLNGKTDEGGNSFGSLSRIEGLGRAARRQLAFVLDEFWGQLFDFHGHITQEAKANKIDLLLGVGVDLRPTSSLQKVDASRKDYSEYSGSVRGRASNTLANSDLYDYSKQPMMQSNSESYGLQRSTSSMRTDPIQLVDAYVQNSTHNLLDSGERRYFSVRNLHSSEARDYQPATIHGYQTASYLSRLGKDTDSANLNGPVDLSSLKSPSIVNAKYRDSLAFALGKRLCSGQSVGQPPGFPKVAISRDCQLQSERSHYDVCSSGSADNSVNSVNTKKYHSLPDISGYSIPHRSAYVSDKNAPSDGSAGYGSYASRTCYQRLPYSNSGTRTGGHLTFNELSSSKAYNEALSSQLNSGFDTGSLRSRLPCEQFGPEKNRNIAMEGVGSRPKAIVQETTFVDMERKLLLSVRLCIVKLLKLEGSDGLFRQNGGADEDLIDSVAVREKVVCELETRETSQVNHVGEAQYCIADRKLSFSSSPVPNCGEGCVWRTDLIISFGVWCIHSILNLTLVESRPELWGKYTYVLNRLQGIIDPAFFKPRSPLAPCFCLQVLTAHQRKLNPHLSNEMILPTAKPGRGKCTTASGLLELIKDVELAISCRKGRTGTVAGDVAFPKGKENLASVLKRYKRRLSNKPAGTNEGTGSRKTPR*	1289

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu1g1839	1288	MobiDBLite	consensus disorder prediction	583	598	-	-
	Pvu1g1839	1288	PANTHER	ETHYLENE-INSENSITIVE PROTEIN 2	20	1177	-	-
	Pvu1g1839	1288	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	20	1177	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu1g1839	1288	PIRSF	EIN2	7	1287	IPR017187	GO:0009873
	Pvu1g1839	1288	Pfam	Natural resistance-associated macrophage protein	44	397	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu1g1839	1288	MobiDBLite	consensus disorder prediction	604	620	-	-
	Pvu1g1839	1288	MobiDBLite	consensus disorder prediction	583	654	-	-
	Pvu1g1839	1288	MobiDBLite	consensus disorder prediction	1274	1288	-	-
	Pvu1g1839	1288	MobiDBLite	consensus disorder prediction	628	654	-	-
	Pvu1g1839	1288	MobiDBLite	consensus disorder prediction	1267	1288	-	-
	Pvu1g1839	1288	PRINTS	Natural resistance-associated macrophage protein signature	103	129	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu1g1839	1288	PRINTS	Natural resistance-associated macrophage protein signature	205	228	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu1g1839	1288	PRINTS	Natural resistance-associated macrophage protein signature	307	326	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Pvu1g1839	1288	PRINTS	Natural resistance-associated macrophage protein signature	367	386	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu1g1839	Pvu-Chr1	44116445	44125962	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu1g1839	7	1285	Miscellaneous Gene Families	AT5G03280	49.580	0.0	1148

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu1g1839	-		K14513	gmx:100813034	2017.66

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu1g1839	1	44116445	44125962	Pvu1g1839	1	44116445	44125962	ECH
	Pvu1g1839	1	44116445	44125962	Pvu7g1549	7	37134085	37142031	PCT