Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1780 ATGATGGAGAAACAATTGACAGGTATACGGGGTGATTCTCCCCTACAATCTGCAATTCGAGCTGGAAATTTAGAATTGGTTCGGGAAATCACCTCTCAGAGTCCAGAGGGAGAATTAAAGGAGCTTCTTTCAAAGAGAAACAACTCGTGTGAAACTGCCTTGTACGTTGCGGCTGAAAATGATCATCTTGATATAGTGAAGGAATTGATTGGATACTATGATATTGGGTTGGCCGGCTTCAAAGCTCGAAATGGATTCGATGCATTCCACATCGCTGCTAAGAATGGACACTTGGAGATATTGAAGGTCCTCATGGAGTTTATTCCTGAAAGTTCAATGACTGTTGATCTGTCAAACACTACTGCTTTGCATACTGCTGCAGCACAAGGACATCTTGAGGTAGTCAATTTTCTCTTGGAAAATGGTAGCAGCTTGATAACTATTGCGAAAAGCAATGGGAAAACTGTGTTGCATTCTGCTGCAAGAAATGGTCATGTAGAGATAGTCAAGGCCCTTCTGAACAAAGAACCTGAAATTGCAGTGAGAATGGATAAGAAGGGGCAGACAGCACTCCATATGGCAGTTAAAGGACAGAATCTTGAGTTGGTGGATGATCTTGTGAAACTGAATTCATCTTTGGCTAATATGGTGGACGCCAAGGGAAACACTGCATTGCATATAGCAACCCGGAAGGGTCGTTTACTGGTTGTTCAGAAGCTACTAGATTGCAGAGAAATAGACAAAGATGTTATTAACAAATCTGGAGAAACTGCCTTAGATACTGCAGAAAGAAATGGTCGGTTGGAAATCTCCAACTTTCTGCAACACCGGGGAGCTCAAAGTGCCAAGTCCATCAAGTCACCTAATACAAACACAGCCCTTGAGCCCAAAAGAACATTGAATGACATAAAAAGCGGGGTTCATAACCAGCTGCAACACACTTTTAAAACACACAGACGCATGCAAGGTATAGCGAAGCGAATTAACAAAATGCACACTGAGGGGCTTAACAATGCAATCAACTCCAACACTGTGGTTGCTGTCCTAATTGCAACAGTTGCTTTTGCTGCCATATTTAATGTCCCGGGCCAGTATCCTGAGCAACAAGATAAACTCTCTCCTGTAATGTCTCCTGGGGAAGCATATATTGCTCCCGATATTGGATTCAAGATATTCATAATCTTTGATTCTACTGCCCTCTTCATATCATTGGCTGTTGTGATTGTCCAAACATCAGTGGTTGTTATTGAGAGGAAAGCAAAGAGACAAATGATGGCAGTAATAAATAAGTTGATGTGGGTATCTTGTGTGCTAATTTCGGTGGCGTTTATTGCAATGTCATTCATAATTGTTGGAGATCATAAAGAGTTGGCTATAGCAGCCACAGCTATAGGGACAGTGATTATGGCAGCAACTTTAGGAACACTATGTTATTGGGTGATTGTTCACCGCCTTGAGGCCTCAAGATTGCGAAGTCTTAGGACAACAATGAGCAGTAGGCAGTCAATGTCTATGTCAATGATGTCAGGATCGGAGAATGAATACAAGACAGTGTACGCCGTATAA 1566 0.4208 MMEKQLTGIRGDSPLQSAIRAGNLELVREITSQSPEGELKELLSKRNNSCETALYVAAENDHLDIVKELIGYYDIGLAGFKARNGFDAFHIAAKNGHLEILKVLMEFIPESSMTVDLSNTTALHTAAAQGHLEVVNFLLENGSSLITIAKSNGKTVLHSAARNGHVEIVKALLNKEPEIAVRMDKKGQTALHMAVKGQNLELVDDLVKLNSSLANMVDAKGNTALHIATRKGRLLVVQKLLDCREIDKDVINKSGETALDTAERNGRLEISNFLQHRGAQSAKSIKSPNTNTALEPKRTLNDIKSGVHNQLQHTFKTHRRMQGIAKRINKMHTEGLNNAINSNTVVAVLIATVAFAAIFNVPGQYPEQQDKLSPVMSPGEAYIAPDIGFKIFIIFDSTALFISLAVVIVQTSVVVIERKAKRQMMAVINKLMWVSCVLISVAFIAMSFIIVGDHKELAIAATAIGTVIMAATLGTLCYWVIVHRLEASRLRSLRTTMSSRQSMSMSMMSGSENEYKTVYAV* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1780 521 SUPERFAMILY Ankyrin repeat 14 279 IPR036770 -
Pvu1g1780 521 Gene3D - 180 278 IPR036770 -
Pvu1g1780 521 Gene3D - 114 179 IPR036770 -
Pvu1g1780 521 ProSiteProfiles Ankyrin repeat region circular profile. 84 106 - -
Pvu1g1780 521 ProSiteProfiles Ankyrin repeat profile. 152 184 IPR002110 GO:0005515
Pvu1g1780 521 Pfam Ankyrin repeats (3 copies) 199 279 IPR002110 GO:0005515
Pvu1g1780 521 Pfam Ankyrin repeats (3 copies) 10 75 IPR002110 GO:0005515
Pvu1g1780 521 ProSiteProfiles Ankyrin repeat profile. 84 106 IPR002110 GO:0005515
Pvu1g1780 521 ProSiteProfiles Ankyrin repeat profile. 186 218 IPR002110 GO:0005515
Pvu1g1780 521 Pfam Domain of unknown function 334 449 IPR026961 -
Pvu1g1780 521 PANTHER ANKYRIN REPEAT PLANT PROTEIN 1 521 - -
Pvu1g1780 521 Pfam Ankyrin repeats (many copies) 119 173 IPR002110 GO:0005515
Pvu1g1780 521 ProSiteProfiles Ankyrin repeat region circular profile. 220 242 - -
Pvu1g1780 521 Gene3D - 5 113 IPR036770 -
Pvu1g1780 521 ProSiteProfiles Ankyrin repeat region circular profile. 152 179 - -
Pvu1g1780 521 SMART ANK_2a 84 115 IPR002110 GO:0005515
Pvu1g1780 521 SMART ANK_2a 220 250 IPR002110 GO:0005515
Pvu1g1780 521 SMART ANK_2a 10 41 IPR002110 GO:0005515
Pvu1g1780 521 SMART ANK_2a 152 181 IPR002110 GO:0005515
Pvu1g1780 521 SMART ANK_2a 254 283 IPR002110 GO:0005515
Pvu1g1780 521 SMART ANK_2a 118 148 IPR002110 GO:0005515
Pvu1g1780 521 SMART ANK_2a 186 215 IPR002110 GO:0005515
Pvu1g1780 521 SMART ANK_2a 49 77 IPR002110 GO:0005515
Pvu1g1780 521 ProSiteProfiles Ankyrin repeat region circular profile. 118 145 - -
Pvu1g1780 521 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515
Pvu1g1780 521 ProSiteProfiles Ankyrin repeat region circular profile. 186 213 - -
Pvu1g1780 521 ProSiteProfiles Ankyrin repeat profile. 220 242 IPR002110 GO:0005515
Pvu1g1780 521 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 1 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1780 Pvu-Chr1 43516659 43520184 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1780 2 521 Miscellaneous Gene Families AT1G07710 62.738 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1780 - - gmx:100787392 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1780 1 43516659 43520184 Pvu7g0090 7 625748 630248 ECH
Pvu1g1780 1 43516659 43520184 Pvu1g1780 1 43516659 43520184 ECH