Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1637 ATGGCCGAGCACGGTTTTGATGGACATGATGAAGGATATGTGCCTGAGGACCCTAATTTTACTCATAATCTTTCTGATGAACATGATGTAGGGACTGTTATTGATAGCTCTGGATTTCCTCACCTGCTGCCTGATGAACACGATGCAGTCGATTTGGTGGAGGATGCCGATTTTCCTCAAAATCATTTTGTTGAGCATGAACATGAACATGATGTTGGAGGATTGCCTGGGGACACGGATTCTCCTCAGCAGGAGCATGTTGAGGAAGACCATGGTGTTGGAGATATGTCTGAGAATTTTGATTCTTCTCCGATACAGGGATCCGAGGTTGTTTTGAAAGAAACTGAAATAAAAAAGTGGCCGGGTTGGCCTGGAGAGAATGTCTTCAGGATGTTGGTTCCAGTGCAAAAGGTTGGCAGTATTATTGGCCGAAAGGGTGAGTTTATAAAGAAAATTACAGAAGAGACTAAGGCGCGAATTAAAATTCTTGATGGTCCGCCTGGAATCTCAGAAAGAGCAGTTATGGTTTCTGCAAAAGAAGAGCCAGATCGGCTCATACCACCTGCTGTTGATGGTTTGTTAAGGGTTCATAAGCAGGTTATCAATGTTGACCGTGACCTTGCAGATACCGCATTGACTGCTGGACGATCCATTGTTACCAGGCTTCTAGTGGCAGATACTCAAGCAGGAAGCTTGATTGGGAAGCAGGGATCAACCATAAAATCCATTCAAGATGGCTCTGGTTGCACCATACGTGTTCTTGGATCAGAACACCTGCCAGTATTTGCTCTGCGAGATGATAGTATTGTTGAAATACAAGGGGATTCTACTGGTGTTCACAAGGCAATTGAACTTATTGCTGTTCATTTACGCAAGTTCTTGGTTGATCGCAGCATAGTTGGAGTTTTTGAGACACAGATGCAAATATCAGATGTTAGAGCTAACCAGAATGGACCGCCACATCAAAATTGGGCTCCTCCTCCTCAAGGGTTTCCTGCTCCTGGTGGTGGTGGTGGAGGCTCTGCTTTTGCACCTAATCAACAATATATGCCACCTGCACATCACTATGATAGTTATTACCCACCCACTGAGTTGCCTCCCATGGATAAGCACCTTCATCAAGGTCCACCACCTGCCTATGCAAGGGATGCTTCTGCAGGAATTCATTCATCAAGTGCACAACCACACCAATCTCTTGTAACTAAGGTCACGCAGCACATGCAAATTCCTCTTTCATATGCAGATGCTGTTATTGGAGCATCAGGCACTAATATCAGCTATATTCGTCGTGCTAGTGGAGCAAGTATTACAATTCAGGAAACAAGGGGTGTTCCAGGGGAAATGACTGTCGAGATGAGTGGTACTTCTTCTCAAATACAGGCAGCCCAGCAGCTGGTTCAGAATTTCATGGCTGAAGCTGCAAATGCGACACAGGATCCAATGGGTGGATCAGTTAGCCAAGGTTACAGTGCCTATCCAACTAATGCTCCGGTATACTCATCTCCCCCCTCTAGCACTGGTGCTCATACAGGCCATGTGCCTTCTGCAGACTATGGGCCCGTATATGGCACTAATTATGGGTATTGA 1587 0.4556 MAEHGFDGHDEGYVPEDPNFTHNLSDEHDVGTVIDSSGFPHLLPDEHDAVDLVEDADFPQNHFVEHEHEHDVGGLPGDTDSPQQEHVEEDHGVGDMSENFDSSPIQGSEVVLKETEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGISERAVMVSAKEEPDRLIPPAVDGLLRVHKQVINVDRDLADTALTAGRSIVTRLLVADTQAGSLIGKQGSTIKSIQDGSGCTIRVLGSEHLPVFALRDDSIVEIQGDSTGVHKAIELIAVHLRKFLVDRSIVGVFETQMQISDVRANQNGPPHQNWAPPPQGFPAPGGGGGGSAFAPNQQYMPPAHHYDSYYPPTELPPMDKHLHQGPPPAYARDASAGIHSSSAQPHQSLVTKVTQHMQIPLSYADAVIGASGTNISYIRRASGASITIQETRGVPGEMTVEMSGTSSQIQAAQQLVQNFMAEAANATQDPMGGSVSQGYSAYPTNAPVYSSPPSSTGAHTGHVPSADYGPVYGTNYGY* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1637 528 Coils Coil 459 479 - -
Pvu1g1637 528 Gene3D K Homology domain, type 1 389 478 IPR036612 GO:0003723
Pvu1g1637 528 ProSiteProfiles Type-1 KH domain profile. 126 193 - -
Pvu1g1637 528 ProSiteProfiles Type-1 KH domain profile. 402 466 - -
Pvu1g1637 528 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 213 300 IPR036612 GO:0003723
Pvu1g1637 528 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 121 180 IPR036612 GO:0003723
Pvu1g1637 528 MobiDBLite consensus disorder prediction 1 20 - -
Pvu1g1637 528 CDD PCBP_like_KH 128 197 - -
Pvu1g1637 528 MobiDBLite consensus disorder prediction 68 87 - -
Pvu1g1637 528 Gene3D - 126 295 - -
Pvu1g1637 528 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 392 473 IPR036612 GO:0003723
Pvu1g1637 528 CDD KH-I 404 467 - -
Pvu1g1637 528 SMART kh_6 125 205 IPR004087 GO:0003676
Pvu1g1637 528 SMART kh_6 401 471 IPR004087 GO:0003676
Pvu1g1637 528 SMART kh_6 216 291 IPR004087 GO:0003676
Pvu1g1637 528 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 53 522 - -
Pvu1g1637 528 Pfam KH domain 220 286 IPR004088 GO:0003723
Pvu1g1637 528 Pfam KH domain 404 467 IPR004088 GO:0003723
Pvu1g1637 528 Pfam KH domain 129 181 IPR004088 GO:0003723
Pvu1g1637 528 CDD PCBP_like_KH 219 287 - -
Pvu1g1637 528 ProSiteProfiles Type-1 KH domain profile. 217 286 - -
Pvu1g1637 528 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 53 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1637 Pvu-Chr1 41634002 41638719 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1637 K21444 - gmx:100799901 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1637 1 41634002 41638719 Pvu7g1833 7 41495419 41504913 PCT