Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1604 ATGAGGAGTTTCTTCCCTGCAGAATCCTGTAAAGAGACGCACCCAAATGCTTTGAATCCTCAATCTTGGCTTCAAATTGAAAGAGGGAAACTTCCCAAGTTGTCATCGCATCCTTCCTCTGCCTCGATAGAATCTCTGGTCAAGGTCCCTCAGCCAGCTGTACTACCTTTCTATAAGCCTGCTGATTATGTGGAAGTTTTAGCTCAAATCCATGAAGAGCTTGAGTCTTGTCCTCCACAAGAGCGGTCGAATCTGTTTTTGTTACAGTACCAGGTCTTTAGGGGCCTTGGGGAAGTTAAACTGATGCGTAGAAGTCTTCAGGGAGCCTGGCAGAGAGCCAACACTCTTCATGAGAAGATTATATTTGGGGCATGGTTGAAATATGAGAAGCAAGAGGAAGAACTAATAGCCGACTTGCTTGCCAATTGTGGTAAATGTGCGAAGGAGTTTGCGCCTGTAGATATAGCATCTCATCTTCCATTTGATGTAAATGTAAGTTCTGTGGGAAGAATGACCAAGGAGAACCGCATTTCTCAAAATGTTACTTTTAAAATTGGCGATGAAGAGATAGTTTGTGATAGACAAAAAATTTCTGAACTTTCGGCACCATTTCATGCTATGCTAAAGGGGTATTTCAGCGAATCACGCGCTGAGTCTATAGATTTGTCTGAAAATAATATCTCTCCACTAGGTATGAAGGCAATAAGTAATTTCAGTTTGACTGACAGTTTAATTGAGGTCCCTCCAAATCTTTTATTGGAGATATTAGTTTTTGCAAATAAGTATTGTTGTGAAAGACTTAAAGATGCTTGTGATAGAAGACTTGCATCCTTGGTTTCCTCCAAAGAAGATGCTGTAGAGCTCATGGAATATGCTCTTGATGAGAATTCAACTGTCCTTGCTGCATCCTGTTTGCAAGTCCTTTTGCGTGATCTTCGTAACTGTTTGAATGACAGTCGGGTAGTGGAGATATTTGTTCATGCTAATAAGCAGCAGTTAGCAGTCATGGTTGGGCCAGGTATATTTGCACTTTTCTGTTTCTTAAGTGAAGTTTCTATGAACCTTAATTCTAGTTCGGACAAAACAGCTCATATCCTGGAACGGTTAGTTGAATTTGCTGAGAATGATAAACAGAGACTGCTAGCTTTACATCAGTTGGGATGTGTAAGACTCTTAAGGAAAGAATATGATGAAGCACGTCTTCTTTTTGAAGGGGCTGTAAAAGCAGGCCATATATATTCTGTGGCAGGTTTAGCTAGACTGGAGTTTATAAAGGGTGACAAGCTTTTATCTTATGAGCAGTTCAGCTCAGTCATTTCATCTGTTACTCCACTTGGATGGATGTATCAGGAAAGGTCATTATACTGTGACAGTGACAAAAGGTGGGATGACCTTGAGAAAGCAAGTAATTTGGATCCTACACTTGCATATCCTTACATGTACAGAGCTGCCTCTTTGATGAGGACGCAGAATGCTCAGGCTGCACTAGCAGAAATCAATAGGATTCTTGGGTTCAAACTTTCACTAGAATGCTTAGAAATAAGATTTTTTATTCATCTAACTCTTGAGGACTACAAAGCAGCTCTATGTGATGTTCAAACAATTCTTACTTTACGTTCAGATTATAGAATGTTTGAGGGACGTGTTGCTGCATCCCAACTCTGCACTCTTGTGCGTGAGCATGTTGAACGTTGGACAACTGCTGATTGTTGGGCTCGGTTATATGACTGTTGGTCTGCAGTTGATGATATTGGGTCTCTGTCTGTTATATACCAGATGCTTGAATCTGATGCAGCAAAAGGTATTCTGTACTTCAGACAGTCATTGCTTCTCCTAAGGTTGAACTGTCCTGAGGCTGCTATGCGAAGTTTACAGTTAGCTCGGCAACATGCATCAAGTGAGCATGAACGACTTGTATATGAGGGGTGGATCTTATATGATACAGGTCATTATGAAGAAGGACTCCGGAAAGCGGAAGAGTCTATTAGTATCAAAAGATCTTTTGAGGCATTTTTCCTGAAGGCCTATGCATTGGCTGACTCTAGCATAGATCCATCATGTTCACCTATTGTTATCTCACTTCTGGAAGATGCATTAAAGTGTCCTTCAGATAATCTGCGGAAAGGTCAGGCACTGAACAATCTTGGAAGTGTTTATGTTGACTGCGGTAAATTGGACTTGGCTGCTGATTGTTATATCAATGCCCTTAAAATCCGACATACCCGAGCTCATCATGGTCTTGCACGTGTTCATTGCCTAAAAAATGACAAGACTGCTGCTTATATGGAAATGACAGAACTTATCAAGAAAGCAAAAAACAATGCATCGGCTTATGAGAAGAGGTCTGAGTATTGTGATCGTGAACAAGCAAAGACAGATTTGGAGATGGTCACTAGATTAGATCCTCTTCGGGTGTATCCTTATAGATATCGGGCTGCAGTATTGATGGACAATCACAAGGAAGAGGAGGCCATAGCCGAACTCTCGAGAGCAATCGCATTTAAAGCTGATTTGCACCTTTTGCATCTACGTGCAGCTTTTCATGAACACAAAGAGGACGTCTTAGGTGCTCTAAGAGATTGTCGTGCTGCCCTCTCAGTGGACCCAAACCACCAAGAAATGTTGGAACTTCATAGTCGAGTCAATAGACACGAGCCGTGA 2661 0.4149 MRSFFPAESCKETHPNALNPQSWLQIERGKLPKLSSHPSSASIESLVKVPQPAVLPFYKPADYVEVLAQIHEELESCPPQERSNLFLLQYQVFRGLGEVKLMRRSLQGAWQRANTLHEKIIFGAWLKYEKQEEELIADLLANCGKCAKEFAPVDIASHLPFDVNVSSVGRMTKENRISQNVTFKIGDEEIVCDRQKISELSAPFHAMLKGYFSESRAESIDLSENNISPLGMKAISNFSLTDSLIEVPPNLLLEILVFANKYCCERLKDACDRRLASLVSSKEDAVELMEYALDENSTVLAASCLQVLLRDLRNCLNDSRVVEIFVHANKQQLAVMVGPGIFALFCFLSEVSMNLNSSSDKTAHILERLVEFAENDKQRLLALHQLGCVRLLRKEYDEARLLFEGAVKAGHIYSVAGLARLEFIKGDKLLSYEQFSSVISSVTPLGWMYQERSLYCDSDKRWDDLEKASNLDPTLAYPYMYRAASLMRTQNAQAALAEINRILGFKLSLECLEIRFFIHLTLEDYKAALCDVQTILTLRSDYRMFEGRVAASQLCTLVREHVERWTTADCWARLYDCWSAVDDIGSLSVIYQMLESDAAKGILYFRQSLLLLRLNCPEAAMRSLQLARQHASSEHERLVYEGWILYDTGHYEEGLRKAEESISIKRSFEAFFLKAYALADSSIDPSCSPIVISLLEDALKCPSDNLRKGQALNNLGSVYVDCGKLDLAADCYINALKIRHTRAHHGLARVHCLKNDKTAAYMEMTELIKKAKNNASAYEKRSEYCDREQAKTDLEMVTRLDPLRVYPYRYRAAVLMDNHKEEEAIAELSRAIAFKADLHLLHLRAAFHEHKEDVLGALRDCRAALSVDPNHQEMLELHSRVNRHEP* 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1604 886 SMART tpr_5 635 668 IPR019734 GO:0005515
Pvu1g1604 886 SMART tpr_5 709 742 IPR019734 GO:0005515
Pvu1g1604 886 SMART tpr_5 838 871 IPR019734 GO:0005515
Pvu1g1604 886 SMART tpr_5 601 634 IPR019734 GO:0005515
Pvu1g1604 886 SMART tpr_5 380 413 IPR019734 GO:0005515
Pvu1g1604 886 Coils Coil 761 781 - -
Pvu1g1604 886 Gene3D Potassium Channel Kv1.1; Chain A 169 319 IPR011333 -
Pvu1g1604 886 Coils Coil 363 383 - -
Pvu1g1604 886 Gene3D Tetratricopeptide repeat domain 596 783 IPR011990 GO:0005515
Pvu1g1604 886 SUPERFAMILY TPR-like 466 738 IPR011990 GO:0005515
Pvu1g1604 886 SUPERFAMILY POZ domain 173 275 IPR011333 -
Pvu1g1604 886 PANTHER ETO1-LIKE PROTEIN 1 1 886 - -
Pvu1g1604 886 SMART BTB_4 179 279 IPR000210 GO:0005515
Pvu1g1604 886 SUPERFAMILY TPR-like 692 877 IPR011990 GO:0005515
Pvu1g1604 886 SUPERFAMILY TPR-like 363 503 IPR011990 GO:0005515
Pvu1g1604 886 PANTHER ETO1-RELATED 1 886 IPR044631 GO:0010105
Pvu1g1604 886 ProSiteProfiles TPR repeat profile. 709 742 IPR019734 GO:0005515
Pvu1g1604 886 Gene3D Tetratricopeptide repeat domain 353 577 IPR011990 GO:0005515
Pvu1g1604 886 Gene3D Tetratricopeptide repeat domain 784 885 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1604 Pvu-Chr1 41165637 41174813 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1604 - - gmx:100793740 1647.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1604 1 41165637 41174813 Pvu7g1795 7 40890984 40896073 PCT