Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1572 ATGGAGCTTAGCAAAGTAACGCTGGAGATCTTCTCCAAACTCGAGCAGCAATGGCTTTCCCACTACGAAGCCACGTCCAAAACCCGCATTCTCAGTATTGACGGCGGAGGAACCACCGCCATTGTCTCCGGCGCCGCCCTCGTCCACCTCGAGGACCAGATCCGAGCCCAAACATCCGATCCACACGCGCAAATCGCCGATTACTTCGACATCATCGCTGGAACCGGCATTGGCGCCATCCTCGCCGCCATGATCACCGCTGACGATGGCTTTGGCCGGCCTCTCTACACCGCCCGCGACGCGGTCCGCTTCGTCGCTGACAGCAACCGCGAACTGTACAAGCCGAAGCGCGCCGGCGTGTTCCGCCGCCGCCGCAGATTCTCAGCGCGGAGCATGGAAAACGCACTGAAGCGGGTTTTCCAAAGAAAAGAGGAAGAGCGGCGGATGTTGACTATGAAGGACACGTGTAAGCCTCTGCTCATCCCTTGCTTTGACCTCAAGAGTTCTGCGCCATTTGTGTTCTCCCGAGCCGACGCGTCCGAGTCACCAAGTTTCAACTTCGACCTTTGGAAGGCGTGCCGCGCCACTTCAGCCACGCCAGGCCTCTTCGCGCCGTTCCATTTCTCATCCGTCGACGGAAAGACCTCGTGCGCCGCCGTCGACGGCGGCCTTGTGATGAACAACCCGGCCGCAGCGGCTGTCACGCACGTCATACACAACAAGCGCGACTTCCCCTCAGTGAACGGCGTGGAGGATCTCCTCGTGCTCTCGATCGGAAACGGAGCGTCGACTAAGAGGGTTGATACCGCCGGTGAGTGTTCCACGTCCGCGGTGGTTGACATAGCGCTCGACGGCGTTTCCGAAACCGTTGACCAGATGTTAGGGAACGCCTTCTGCTGGAACCGTACGGATTATGTCAGGATTCAGGCCTTCGGTTTGGGAGAAGGAAAAGAAGAGAAAGTGCTGAACGAGAGAGTGCTGGAATCGCTACCGTTTGGGGGTAAACGATTACTGCAGGAAACTAATTCTGACCGAATCGAGAGTTTCGTACAACGTCTTGTTGTTACCGGAAAGACTAGTCTGCCCCCTAGTCCCTGCAAGGTGCCGCCGCAAGACTCTCGCTAA 1125 0.5787 MELSKVTLEIFSKLEQQWLSHYEATSKTRILSIDGGGTTAIVSGAALVHLEDQIRAQTSDPHAQIADYFDIIAGTGIGAILAAMITADDGFGRPLYTARDAVRFVADSNRELYKPKRAGVFRRRRRFSARSMENALKRVFQRKEEERRMLTMKDTCKPLLIPCFDLKSSAPFVFSRADASESPSFNFDLWKACRATSATPGLFAPFHFSSVDGKTSCAAVDGGLVMNNPAAAAVTHVIHNKRDFPSVNGVEDLLVLSIGNGASTKRVDTAGECSTSAVVDIALDGVSETVDQMLGNAFCWNRTDYVRIQAFGLGEGKEEKVLNERVLESLPFGGKRLLQETNSDRIESFVQRLVVTGKTSLPPSPCKVPPQDSR* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1572 374 PANTHER PATATIN-LIKE PROTEIN 6 2 370 - -
Pvu1g1572 374 PANTHER PATATIN 2 370 - -
Pvu1g1572 374 Gene3D Cytosolic phospholipase A2 catalytic domain 17 361 - -
Pvu1g1572 374 CDD Pat17_PNPLA8_PNPLA9_like 30 330 - -
Pvu1g1572 374 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 31 234 IPR002641 GO:0006629
Pvu1g1572 374 Pfam Patatin-like phospholipase 31 233 IPR002641 GO:0006629
Pvu1g1572 374 SUPERFAMILY FabD/lysophospholipase-like 27 315 IPR016035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1572 Pvu-Chr1 40654529 40656215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1572 1 367 Acyl Lipid Metabolism Gene Families AT3G63200 69.437 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1572 - - gmx:100784729 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1572 1 40654529 40656215 Pvu1g1572 1 40654529 40656215 ECH
Pvu1g1572 1 40654529 40656215 Pvu7g1772 7 40528758 40530675 PCT