Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1552 ATGGGTTTATGTCCTCAACGGTCCATCACCAACCAGTTTCTTTTATCTCCCTCCCGGAATCTTCAAAAAATGCCTCTTCCTTCTCTCTGCAAAAGGTTCTGGTTCTGGTTCTTGGGCATCTCCCTCTTGTTGTCTTTAACACCCACACTCCAAATCCCCTTGGTAGCCCCAATCTCAAAAGACCCCTCCTCCCAACTCTTCACAGTCTCCCTCTTCCTCAAAACCCCACTCCAGCACACCCCACTCCATCTCGACCTCGGTTCCTCCCTCACCTGGCTCCTCTGCGACTCCACCTACACCTCCTCCTCCTCCCACCAAATCCCCTGCAACACCTCCTTATGCGACTCCTTCCCCTCCAACGCCTGCTCCAACGACTCATGCGCCCTCTTCCCGGAAAACCCCCTCACAAGAACCACCCTTCTCGACACCGCCCTCATCGACTCTCTCGCCCTTCCCTCCTACGACACCTCCTCCCAGAGCCCACTCGTTCTCATTTCCGATTTCATCTTCTCCTGCGGCGGCGCTCATTTGCTCCAAGGCCTCGCTACCAATGTGGCCGGACTAGCCGCTTTGGGCCGGTCCAATTACTCCCTCCCGGCCCAAATAAGCACCGCATTGAGTTCCCCTCATTCTTTCTCTCTCTGCTTGCCCTCTTCATCCAACACAGGCGCAGCTATCTTCGCCTCCACCACCATCTCTTCCTTCTTCTCTTCCAAAATTGACCTCACTTACACCCCCCTCATCCTGAACCCCGTCGCCGACACTGTCGTCACCCACAACTCACAACCTTCCGATGAGTATTTCATAAACGTCACCTCCATAAAGATCAACGGCAAGGCTCTTCCGATCAACGGCTCCATCTTAACCGTTGATGAAACCGGCTTCGGTGGGACCAAGATCAGCACTGCGGAGCCCTACACCGTTTTGGAAAGTTCCATTTACAAACTCTTCGTCCAGTTTTTTGTTAACGAATCCTCCGCTTTTAATTTAACGGTGACGGAGGGCGTTGAGCCCTTTGGCGTGTGCTATCCTGCGGGAGACCTGACGGAGACAAGAGTGGGACCCGCGGTTCCAACCGTTGATCTGGTGATGCAGAGCGAGGAAGTGTTTTGGAGAATTTTCGGGGGGAATTCGATGGTGAGGATTGAAAAGGGAGGAGTGGATGTGTGGTGTTTGGGTTTCGTGGACGGTGGGAGCCGTAGGAGGAGTGCGGTTGTGATTGGAGGGCATCAATTGGAGGATAATGTAGTTGAGTTTGATGTTGACTCAAATAGATTTGGTTTCACCTCATCTCTGTTGCTTCAGGGTACCAACTGTGCTAATCTCACTCTCACTAATCTTACCAATCCCATTAGTTAG 1359 0.5261 MGLCPQRSITNQFLLSPSRNLQKMPLPSLCKRFWFWFLGISLLLSLTPTLQIPLVAPISKDPSSQLFTVSLFLKTPLQHTPLHLDLGSSLTWLLCDSTYTSSSSHQIPCNTSLCDSFPSNACSNDSCALFPENPLTRTTLLDTALIDSLALPSYDTSSQSPLVLISDFIFSCGGAHLLQGLATNVAGLAALGRSNYSLPAQISTALSSPHSFSLCLPSSSNTGAAIFASTTISSFFSSKIDLTYTPLILNPVADTVVTHNSQPSDEYFINVTSIKINGKALPINGSILTVDETGFGGTKISTAEPYTVLESSIYKLFVQFFVNESSAFNLTVTEGVEPFGVCYPAGDLTETRVGPAVPTVDLVMQSEEVFWRIFGGNSMVRIEKGGVDVWCLGFVDGGSRRRSAVVIGGHQLEDNVVEFDVDSNRFGFTSSLLLQGTNCANLTLTNLTNPIS* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1552 452 Gene3D Acid Proteases 49 228 IPR021109 -
Pvu1g1552 452 PANTHER ASPARTYL PROTEASE-RELATED 40 442 IPR001461 GO:0004190|GO:0006508
Pvu1g1552 452 Pfam Xylanase inhibitor N-terminal 67 227 IPR032861 -
Pvu1g1552 452 ProSiteProfiles Peptidase family A1 domain profile. 67 429 IPR033121 -
Pvu1g1552 452 SUPERFAMILY Acid proteases 60 439 IPR021109 -
Pvu1g1552 452 Gene3D Acid Proteases 229 446 IPR021109 -
Pvu1g1552 452 PANTHER OS05G0403000 PROTEIN 40 442 - -
Pvu1g1552 452 Pfam Xylanase inhibitor C-terminal 266 429 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1552 Pvu-Chr1 40291563 40293172 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1552 - - pvu:PHAVU_001G149500g 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1552 1 40291563 40293172 Pvu6g0978 6 21151848 21153399 ECH
Pvu1g1552 1 40291563 40293172 Pvu1g1552 1 40291563 40293172 ECH
Pvu1g1552 1 40291563 40293172 Pvu7g1758 7 40342928 40344936 PCT