Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1277 ATGTGGGCTCTTCGTCGAGCTTCCATCCCTCTCAGGATCCGAGGGTATAATGTGAGAACTTCTTTTCTCCAATTAGCGTCAACTAATTGTGTGGAAGAAGAGAGTGGTATCACCGAGTCTCATGGAATAACTAATGGGGGACTGTTGCTGTGCAATACGCGTTTTTATTCGAGGCAAAGTGCATCACTGGATTCTACTGTGTGGAGACGCGAACTTTCTTCTAGTAGCACCAAAGAAGATGATGATGATTTGGAGGATGGGTTTTCCGAGCTGGGGAGACCTGCTGGTGATGGAAATGAAATTGACAGTCTTTTAGCTTCTGATGCCGACCAATCGGATGACGATGGTGACAGGGAGAATGTAGAGGAGCCTCACAACGAGGTTGATGAGGTGGTCAAGGAGAAAGGAAAACCGCGTCGTGGAAGGGTTGAATCTGAACTATTAAATGAGATCATGAATGTTCCGGGTGTGTCTATTCATGTGGCTCTGGAGAAGTGGTTAGCAGAAGGGAATGAACTAACCAGAGAGGAGGTGTCACATGCCACGTTTTATCTTCGAAGGCGAAAGATGTTTGGGAGAGCTTTGCAGCTCTCAGAGTGGCTCGAGTCAAAAAACCAGTTTGAGTTTCTTGAAAGAGATCATGCGGTTCGCCTTGATTTAATTGCCAGAACACGTGGCTTACATAAGGCAGAGGTTTACATTGAGACTATTCCAGAATCTTGTAGTAGAGAGTTAATGCATCGGACGTTATTGGCTAACTGTGTCAGTCAGAACAATGTGAAGAAAGCAGAGGAAGTTTTCAATAAAATGAAGAATTTGGACTTTTCTATTACAGTATTTGCTTGCAATCAGATGTTACTTTTGTATAAGAGGAATAACAAGAAGAAAATAGCTGATGTGTTATTGTTGATGGAAAATGAGAATATAAAACCTTCTTCTCTTACTTATTCAATCTTAATAGACACAAAAGGCCAGTCCAGAGATATTGATGGAATGGATCAAATTCTTGATAGAATGAAAGCTCAAGGCATTGAACCAGACATCAACACACAGGCTGTTTTGGCTAGGCACTACATCTCAGCTGGGCTTCAAGATAAAGCTGAAACCTTATTGAAGGAGATGGAAGGTGAAAACTTAAACCGGAATCGGTGGCTATGCCAAATTTTGCTTCCCCTCTATGCCAACTTAGGAAAGGTGGATGAAGTGGAAAGAGTTTGGAAGGTGTGTGAGACAAACCCTTGGCATGATGAGAGTCTTGTGGCAATTGAAGCTTGGGGAAAGTTGAATAAGGTTGATGAAGCAGAGAATGTTTTTGAGACAATGATAAAGAAAAGGAAGCTTTCTTCCAGGACCGGCTCTGTACTACTGAAGGTTTATGCAAATCATAACAAGCTAATTAAGGGTAAGGATCTCATTAAGCGAATGGGAGATAGCGGGTGCCGAATAGGCCCACTTAGCTGGGATGCAATGGTGAAACTATATGTCCAAGCCGGGGAAGTGGAGAAGGCTGACTCTATTCTTCACAGGGCAGCCCAGCAGAGTCGGATGAAGCCGATGTTTTCCACCTACCTAACTATTTTGCAGCAGTATGCTGAGAGGGGTGACATTCATAACTCAGAAAAGATTTTCTATAGAATGAAACAAGATGATTATCCATCTAGACCAAGGATGTACCAACTTCTATTGAACGCCTATATAAATGCAAAGGTTCCAGCCTATGGGATTAGGGACAGGTTAAGAGCTGATAGCATATTGCCCACTAAATCTTTGGCATACCAGTTGATTCAAGTTGATGGATTTAGGAAGAATTCAGTCTCCGATTTGCTTGACTGA 1833 0.4261 MWALRRASIPLRIRGYNVRTSFLQLASTNCVEEESGITESHGITNGGLLLCNTRFYSRQSASLDSTVWRRELSSSSTKEDDDDLEDGFSELGRPAGDGNEIDSLLASDADQSDDDGDRENVEEPHNEVDEVVKEKGKPRRGRVESELLNEIMNVPGVSIHVALEKWLAEGNELTREEVSHATFYLRRRKMFGRALQLSEWLESKNQFEFLERDHAVRLDLIARTRGLHKAEVYIETIPESCSRELMHRTLLANCVSQNNVKKAEEVFNKMKNLDFSITVFACNQMLLLYKRNNKKKIADVLLLMENENIKPSSLTYSILIDTKGQSRDIDGMDQILDRMKAQGIEPDINTQAVLARHYISAGLQDKAETLLKEMEGENLNRNRWLCQILLPLYANLGKVDEVERVWKVCETNPWHDESLVAIEAWGKLNKVDEAENVFETMIKKRKLSSRTGSVLLKVYANHNKLIKGKDLIKRMGDSGCRIGPLSWDAMVKLYVQAGEVEKADSILHRAAQQSRMKPMFSTYLTILQQYAERGDIHNSEKIFYRMKQDDYPSRPRMYQLLLNAYINAKVPAYGIRDRLRADSILPTKSLAYQLIQVDGFRKNSVSDLLD* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1277 610 MobiDBLite consensus disorder prediction 67 139 - -
Pvu1g1277 610 TIGRFAM PPR: pentatricopeptide repeat domain 315 348 IPR002885 -
Pvu1g1277 610 TIGRFAM PPR: pentatricopeptide repeat domain 247 278 IPR002885 -
Pvu1g1277 610 Pfam Pentacotripeptide-repeat region of PRORP 248 405 IPR033443 -
Pvu1g1277 610 Gene3D Tetratricopeptide repeat domain 422 604 IPR011990 GO:0005515
Pvu1g1277 610 Gene3D Tetratricopeptide repeat domain 243 421 IPR011990 GO:0005515
Pvu1g1277 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Pvu1g1277 610 MobiDBLite consensus disorder prediction 118 139 - -
Pvu1g1277 610 SUPERFAMILY TPR-like 347 554 IPR011990 GO:0005515
Pvu1g1277 610 Pfam PPR repeat 521 549 IPR002885 -
Pvu1g1277 610 Pfam PPR repeat 454 480 IPR002885 -
Pvu1g1277 610 Pfam PPR repeat 486 509 IPR002885 -
Pvu1g1277 610 Pfam PPR repeat 422 444 IPR002885 -
Pvu1g1277 610 PANTHER OS12G0527900 PROTEIN 39 610 - -
Pvu1g1277 610 PANTHER OS01G0280400 PROTEIN 39 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1277 Pvu-Chr1 34537308 34544204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g1277 151 548 EF-hand Containing Proteins AT1G02150 24.088 3.67e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1277 - - gmx:100500196 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1277 1 34537308 34544204 Pvu7g1493 7 35935408 35936126 ECH
Pvu1g1277 1 34537308 34544204 Pvu1g1277 1 34537308 34544204 ECH