Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g1135 ATGGGTGCAAGTCGAAAGCTCCAGGGAGAGATAGATCGTGTTCTGAAGAAGGTCCAGGAAGGTGTTGAAGTCTTCGATAGCATCTGGAACAAGGTTTACGACACGGACAATGCTAACCAGAAGGAGAAATTTGAAGCAGACCTCAAGAAGGAGATTAAGAAGCTCCAGAGGTACAGAGACCAAATAAAAACGTGGATTCAGTCCAGTGAGATCAAGGACAAGAAGGTTAGTGCCTCATATGAGCAAGCTTTGGTGGATGCACGCAAGCTAATTGAACGAGAAATGGAAAGATTTAAGATATGTGAGAAGGAAACAAAGACCAAAGCATTTTCTAAAGAAGGTTTGGGTCAGCAGCCTAAGACTGATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGGTTGGAGAGTTAGAATCCCAGATTGATAACTTTGAAGCAGAGCTTGAAGGGCTTTCTGTTAAGAAAGGAAAGAGCAGGCCACCCAGATTGACACATCTAGAGACATCAATTACTCGGCACAAGGCTCATATAAAAAAATGTGAATTCATTTTGAGGCTACTAGATAATGATGAATTAAGTCCTGAGCAGGTTAATGATGTTAAAGATTTCTTGGATGACTATGTTGAGCGTAATCAGGAGGATTTTGATGAATTTAGTGATGTTGATGAACTGTACAGTTCATTACCTTTAGACAAGGTGGACACCCTAGAAGAACTTGTTACAATTCCCACCGCTCTTTCTAAGGTGGCACCTAGTCTTGGCGTGAAAAATTCTTCAGTAGTATCAACATCACAATCAGCGTCAGCATCTGCATCACAAACATCTGAAGCTATTATTTCTAATCACCAGGATACATCTGTCCAGGAGCAAGCTGATGACACAGCATCCCAGGATAGCAATTCTGACAATGTTGCCAAAACTCCACCTCCTAAAAGTGGTGGAATTAGTTCTGCTACTTCAACTCCTACTGGCAACCTCACTTCTCCAATTTCTGTGAATGTTTCTAGTCATACCCTATCTAGTCCACCTGCTGTTGCAGCCATACCTAGCTCAAATTCGGTGCGGAATGTCTTGGAGAGTAGTAATGTTACCAATTCATCTTCTGTAAATCAGTCTACCTCTACAAAGGAGGAAGACATTAATAGCTTCCCTAGCCGGAGACCGTCTCCATCGCTTTCTGATGCAACACTTTTGAGGGGAAGAAACTCCCTATCAAATCAAGCAACAGCCAGCATCCCTCTTGGTTCTGCAAACATGGTTCCTAGCAATGGGGCCCTTGGATCAGTCCCTTCAGCCTCTGAAATAGCTAAAAGGAACATGTTGGCCGCTGATGATAGACTTGGAAGTAGTGCGATGGTGCAGCCTCTTGTATCCCCACTAAGTAATAGATTGATCTTGCCTCAGGCTGCAAAGGCTAATGATGGAACTGTTTCAGTTGACGCTAGTACTGTTAATGACACTGGAGCTGTATCTGGGAGAGTTTTCTCCCCTTCTGTTGTTCCTGGCATGCAATGGAGACCTGGAAGTCCCTTTCAGAATCAGAATGATGCTGGCCAGCTTCGGGGAAGAACTGAAATAGCTCCTGATCAAAGGGAAAAGTTTTTGCAGAAGTATCAGCAAGTGCAACAAGGGCACAGTACCCTTCTTAATATGCCTTCTCTTGTTGGGGGAAACCATAAGCAGTTTTCTGCCCAGCAGCAAAACCCCCTTTTGCAACAGTTTAACTCTCATGGCTCATCTGTTTCTTCTCAATCTGGTATTGGACTTGGGGTCCAGTCCACAAGTCTCAGCGGTATTTCTTCTGCATCACTACAGCAGCCACCCAATTCTGTCCATTCCCCCTCTAGTCAACAGTCACTGATGCCAGGTGTTTCTAAAGATTCAGATGTTGGCAATTCCAAGAGTGAAGAACAGCAGCAACATCAGAATTTTCCTGATGAGCCAATAACTGAATCTACTGCTAGCACTGGGATTGGCAAGAATCTCATAAATGAAGATGATTCAAAATCAGCATATGCTGTAGATTCTCCTGTAGGAGTGTCTGCCTCTCTTCCAGAATCTGCTCAAACTTCCAGAGATATTGATTTGTCTCCTGGCCAACCATTACAATCCAATCAACCTACTGGCAACCTTGGTGTCATTGGTAGAAGAAATGGTTCTGAACATGGAGCAATTGGTGATGGTTTTAATGCATCCAGTGTTAGTTCTGGTGGAGTGCGTGATCAATTGTATAATTTGCAAATGCTTGAGGCAGCCCACTTCAAAATTCCCCTACCCAAAGACTCTGAACGTCCCAGGACTTATACACCTAAACATCCGACAATTACACCTCCTAGTTATCCTCAAGTACAGTCACCTATTGTTAATAATCCCGCCTTTTGGGAGAGAGTGGGTCTGGAACCATTTGGCACTGATACTCTATTCTTTGCGTTTTATTATCAACAGAATACTTACCAACAATATCTGGCTGCAAAGGAGTTAAAGAAGCAGTCTTGGAGATACCACAGAAAGTTTAACACTTGGTTTCAGCGGCATGAAGAGCCTAAAGTTGCTACTGATGAATATGAGCAGGGAACTTATGTGTACTTTGATTTCCAAATTACAAATGACGAGATGCAACATGGATGGTGTCAAAGAATCAAGACTGAATTCACTTTTGAGTATAATTATCTTGAAGATGATCTCCTTGTATAA 2709 0.4286 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPREKAKSETRDWLNNVVGELESQIDNFEAELEGLSVKKGKSRPPRLTHLETSITRHKAHIKKCEFILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVDELYSSLPLDKVDTLEELVTIPTALSKVAPSLGVKNSSVVSTSQSASASASQTSEAIISNHQDTSVQEQADDTASQDSNSDNVAKTPPPKSGGISSATSTPTGNLTSPISVNVSSHTLSSPPAVAAIPSSNSVRNVLESSNVTNSSSVNQSTSTKEEDINSFPSRRPSPSLSDATLLRGRNSLSNQATASIPLGSANMVPSNGALGSVPSASEIAKRNMLAADDRLGSSAMVQPLVSPLSNRLILPQAAKANDGTVSVDASTVNDTGAVSGRVFSPSVVPGMQWRPGSPFQNQNDAGQLRGRTEIAPDQREKFLQKYQQVQQGHSTLLNMPSLVGGNHKQFSAQQQNPLLQQFNSHGSSVSSQSGIGLGVQSTSLSGISSASLQQPPNSVHSPSSQQSLMPGVSKDSDVGNSKSEEQQQHQNFPDEPITESTASTGIGKNLINEDDSKSAYAVDSPVGVSASLPESAQTSRDIDLSPGQPLQSNQPTGNLGVIGRRNGSEHGAIGDGFNASSVSSGGVRDQLYNLQMLEAAHFKIPLPKDSERPRTYTPKHPTITPPSYPQVQSPIVNNPAFWERVGLEPFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKFNTWFQRHEEPKVATDEYEQGTYVYFDFQITNDEMQHGWCQRIKTEFTFEYNYLEDDLLV* 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g1135 902 PIRSF NOT_su_3_5 1 902 IPR012270 GO:0006355|GO:0030015
Pvu1g1135 902 Coils Coil 41 61 - -
Pvu1g1135 902 MobiDBLite consensus disorder prediction 603 668 - -
Pvu1g1135 902 MobiDBLite consensus disorder prediction 287 334 - -
Pvu1g1135 902 MobiDBLite consensus disorder prediction 687 718 - -
Pvu1g1135 902 Pfam NOT2 / NOT3 / NOT5 family 758 896 IPR007282 GO:0006355
Pvu1g1135 902 Gene3D - 742 897 IPR038635 -
Pvu1g1135 902 MobiDBLite consensus disorder prediction 687 724 - -
Pvu1g1135 902 MobiDBLite consensus disorder prediction 110 131 - -
Pvu1g1135 902 PANTHER BNAA10G16600D PROTEIN 1 902 - -
Pvu1g1135 902 MobiDBLite consensus disorder prediction 764 787 - -
Pvu1g1135 902 Coils Coil 132 159 - -
Pvu1g1135 902 PANTHER CCR4 NOT-RELATED 1 902 IPR040168 GO:0030015
Pvu1g1135 902 MobiDBLite consensus disorder prediction 366 401 - -
Pvu1g1135 902 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 236 IPR007207 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g1135 Pvu-Chr1 29723539 29736287 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g1135 K12580 - gmx:100785965 1530.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g1135 1 29723539 29736287 Pvu1g1135 1 29723539 29736287 ECH
Pvu1g1135 1 29723539 29736287 Pvu4g0846 4 13390030 13415888 PCT