Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0740 ATGCCACCTTCCCCTTCCTTCCCTTCAGACAACCGAACCAAATGGCGGAAGAAGCGCAAGCGACAATCCCACAAACCACACCCCAACCGCCACCACCAAGACGACGACGACAACGATTCCGACGACGACCGCGACGACAACGACTCCGACGACCAGTTCCGCAGCCCTAACGCGCCGCCCAACCCCAACCCGCGACTCGAGATCGAGGTCGTCTCGCGCGACGGGCTCCAGATTTCGCGCTTCCCGCCGGCGATCAGGCGCACCGTTACCCGCCCTCACGCGGCGGTCGCGGCGATTGTGGCTCTGGAGTCCGGCAGGGGGCACTCGCAGCACGGCGTTCCGGTTCTCGAGAATGTGTCTCACGGCCAGCTTCAGGCGTCCTCTGCTGTGTCCGCTGATTGCCTCGGTGGGGGCTCGAGCTTCGTCGCGGCTCCGCCTCCCGTTATGAAAGGCTCCGGCGTTGTTAAGCGGTTTGGCACTAGGGTTCTAGTGGTCCCTATGCATTCAGATTGGTTTTCTCCAGCCTCAGTGCATCGACTTGAGAGACAAGCAGTGCCACATTTCTTTTCTGGAAAGTCGCCAGATCATACGCCAGAGAAGTACATGGAATGTAGGAATTACATTGTTGCAAGATACATGGAGGACCCAGGGAAGAGGATTACAGTCCCTAGTTGCCAGATTTTGTCAGTCGGTGTTGGTAATGAAGATTTAACTCGAATTGTCAGGTTCCTTGATCAATGGGGAATTATCAATTACTGTGCTCAGGACCCAAGGCGTGAGTATTTGGACAATGATACTTGCCTGACGGAGGACACAAGTGGTGCACTATGTGTGCCATCAGTGGCTTTAAGATCCATAGATAGTTTGATTGAGTTTGACAAGCCCAAGTGTAAATTCAAAGCTGAAGAAATTTATTCATCTAGAACAATGCACAATACCAATATTTCTGATTTGGATGGCACAATAAGAGAGTATCTATCTGAAAACTATTGCCACTATTGTTCCCGTTCTCTTCCTGTTGTATACTACCAATCACAGAAAGAGGTTGATATTTTACTCTGCACTGATTGCTTTCATGATGGGAGATTTGTTACTGGTCATTCTAGTATAGATTTTATTACAGTGGATTCAACTACAGATTATGGTGATCTAGATGGGGATAGTTGGACTGATCAAGAGACTTTATTGCTGCTTGAAGCAGTGGAGGTTTACAACGAGAATTGGAATGAAATTGCCGAGCATGTTGGTACCAAGTCTAAAGCACAATGCATTCTTCATTTTCTCCGTCTACCTGTAGGAGATGGAAAGTTGGAAAACATCAATGTTTCAAGTTTGTCCTTGTCATCCAATATCAATAATCAAGAGGGTAATGGAAGATTGCATTGTTGCTCAAATGGGAGTTCTGCGGGACCCATACATAACAAGGATTCTGATGGAAGGCTTCCTTTCGCAAATTCTGGAAATCCAGTTATGGCACTGGTTGCCTTTTTAGCCTCTGCTGTTGGACCAAGAGTAGCTGCAACTTGCGCTCATGCAGCATTAGCCGCATTGTCAGAGAATAATTCAGGGAGCGTGTCAGATATAGAAGCTCTGGAAAATGAAAACAGGACAAATTCAGAAAGCATAAACAATAGAGATGGTGGCCATCATGGAGTGGTTGCAAACTCAAATCAGAAAAATGAGGACAAGTCAAAAGTACCTGGTTCATGTGCTCAAGATGAGGCTGGGTCGATCCTGCTGTCTGCTGAGAAAGTCAAAGATGCTGCCAAAGCAGGCCTCTCTGCTGCAGCAATGAAAGCTAAATTGTTTGCGGATCATGAAGAGCGAGAAATTCAGAGGCTATGTGCTAATATTGTTAATACTAAGTTGAAAAGATTGGAACTGAAGTTGAAGCAGTTTGCAGAAATTGAAACACAGTTGATGAAAGAATGTGAACAAGTTGAGAAGCTGAGGCTGAGGTTTGCTTCTGAACGGTCCCATGTCGTTTCAGCACGTCTTGGAAATGGTGGAACCACTCCTCCAATGAATGTATCAGGCGTTGGTCCTTCCATGATTAACAATAATAGTAACAGTAGGCAGCAAATGATTTCTGCTTCTTCCTCACAGCCTAGCATCTCAGGGTATGGCAACAGCCAACCAGTTCATCCACACATGTCCTTTGTCCCGCGGCCTTCAATGTTTGGATTAGGGCAAAGGTTGCCCCTATCTATGATACAACAATCACAGTCTGTTTCCTCAAATTCGATGTTCAATGGCCCCAGTAATGTGCAGCCTACTCCTAATCATTCGTTGTCGAGGCCTGTGTCAAGAACTAACTCTGGTTTAGGTTAA 2331 0.4693 MPPSPSFPSDNRTKWRKKRKRQSHKPHPNRHHQDDDDNDSDDDRDDNDSDDQFRSPNAPPNPNPRLEIEVVSRDGLQISRFPPAIRRTVTRPHAAVAAIVALESGRGHSQHGVPVLENVSHGQLQASSAVSADCLGGGSSFVAAPPPVMKGSGVVKRFGTRVLVVPMHSDWFSPASVHRLERQAVPHFFSGKSPDHTPEKYMECRNYIVARYMEDPGKRITVPSCQILSVGVGNEDLTRIVRFLDQWGIINYCAQDPRREYLDNDTCLTEDTSGALCVPSVALRSIDSLIEFDKPKCKFKAEEIYSSRTMHNTNISDLDGTIREYLSENYCHYCSRSLPVVYYQSQKEVDILLCTDCFHDGRFVTGHSSIDFITVDSTTDYGDLDGDSWTDQETLLLLEAVEVYNENWNEIAEHVGTKSKAQCILHFLRLPVGDGKLENINVSSLSLSSNINNQEGNGRLHCCSNGSSAGPIHNKDSDGRLPFANSGNPVMALVAFLASAVGPRVAATCAHAALAALSENNSGSVSDIEALENENRTNSESINNRDGGHHGVVANSNQKNEDKSKVPGSCAQDEAGSILLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIVNTKLKRLELKLKQFAEIETQLMKECEQVEKLRLRFASERSHVVSARLGNGGTTPPMNVSGVGPSMINNNSNSRQQMISASSSQPSISGYGNSQPVHPHMSFVPRPSMFGLGQRLPLSMIQQSQSVSSNSMFNGPSNVQPTPNHSLSRPVSRTNSGLG* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0740 776 Gene3D - 169 256 IPR036388 -
Pvu1g0740 776 Gene3D - 385 435 - -
Pvu1g0740 776 Pfam SWIRM-associated region 1 591 664 IPR032451 -
Pvu1g0740 776 MobiDBLite consensus disorder prediction 13 27 - -
Pvu1g0740 776 SMART sant 385 433 IPR001005 -
Pvu1g0740 776 Pfam SWIRM domain 166 252 IPR007526 GO:0005515
Pvu1g0740 776 ProSiteProfiles Myb-like domain profile. 381 431 IPR001005 -
Pvu1g0740 776 ProSiteProfiles SANT domain profile. 384 435 IPR017884 -
Pvu1g0740 776 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 59 775 - -
Pvu1g0740 776 CDD SANT 388 430 IPR001005 -
Pvu1g0740 776 ProSiteProfiles SWIRM domain profile. 163 261 IPR007526 GO:0005515
Pvu1g0740 776 SUPERFAMILY Homeodomain-like 386 439 IPR009057 -
Pvu1g0740 776 MobiDBLite consensus disorder prediction 538 565 - -
Pvu1g0740 776 Coils Coil 514 534 - -
Pvu1g0740 776 ProSiteProfiles Zinc finger ZZ-type profile. 326 380 IPR000433 GO:0008270
Pvu1g0740 776 Coils Coil 623 643 - -
Pvu1g0740 776 Pfam Myb-like DNA-binding domain 388 430 IPR001005 -
Pvu1g0740 776 MobiDBLite consensus disorder prediction 691 710 - -
Pvu1g0740 776 MobiDBLite consensus disorder prediction 739 776 - -
Pvu1g0740 776 MobiDBLite consensus disorder prediction 538 568 - -
Pvu1g0740 776 PANTHER SWI/SNF COMPLEX-RELATED 59 775 - -
Pvu1g0740 776 SUPERFAMILY Homeodomain-like 162 260 IPR009057 -
Pvu1g0740 776 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0740 Pvu-Chr1 9564249 9570109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0740 331 427 EF-hand Containing Proteins AT3G07740 32.075 3.27e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0740 K11649 - gmx:100792929 1235.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0740 1 9564249 9570109 Pvu1g0740 1 9564249 9570109 ECH
Pvu1g0740 1 9564249 9570109 Pvu9g1318 9 18900386 18908142 PCT