Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0524 ATGTCTAAAGTTCTTGGCTTTTCCGGAGGTGATGACTTTTGCCCTGGGGGATCACTATACGCCAACCCCAAGGAAGCAAGTTTCTTCCTGCCCCTTGGCCCTCAAGTTGATGTATACTTTCCTCCTAGGAAGAGATCGCGCGTCAACGCTCCATTCGTGTTCGATGGAGAATGGTTTGAGCAAAAGCAGAAAACCTCAATTGAATCCTTGCCAGATGAGTGTCTCTTTGAGATCTTTAGAAGGTTGCCCGCTGGCGAGGACAGGAGTGCATGTGCTTGCGTTTCCAAGCGCTGGCTTATGCTTCTAAGCAGTATTTGCAAAGATGAAATCTGTGTCATCAAGAATTCCAGCGCAGAAAACATTAAAAAGGATGGTGATGATGTAGAATTTGGAGGTGAGGGATACCTCTCTCGGAGCTTGGAAGGAAAGAAGGCCACAGATGTTAGACTGGCTGCCATAGCTGTTGGGACTGCATCTCGCGGAGGGTTGGGGAAGCTTTCCATCCGTGGAACCAACATGTGTCGCGGAGTGACTAGTGTTGGTCTCAAGGCAGTTTCTCATGGATGCCCATCTTTGAAGTCTCTTTCTCTATGGAACGTTTCTACTGTTGGTGATGAGGGCCTAATGGAGATCGCTAATGGTTGTCACCAGCTGGAGAAGCTCGACCTTTGCAAGTGCCCTGCAATTACTGATAAGGCTTTGGTTGCAATTGCAAAGAACTGCCAGAATCTGACTGAGCTGTCATTGGAATCATGCCCTAATGTTGGTAATGAAGGTCTACGAGCTATTGGGAAATTCTGCCCCGATCTAAGGTCCATAACCATCAAGGACTGCACAGGTGTTAGCGATCAGGGAATTGCTGGATTGTTCTCAACTTCTTTGGTTCTGACAAAGGTGAAGCTCCAGGCACTGTCTGTGTCAGATCTCTCTCTAGCCGTTATTGGACATTATGGCAAGTCTGTTACTGATCTTGTCCTTAATTGCCTCCCAAATGTCAGCGAGAAGGGGTTCTGGGTAATGGGAAATGGTAGTGGGTTGCAGAAGCTGAAGTCACTCACAGTTGCATCATGCAGGGGAGTAACAGATATTGGACTTGAAGCTGTAGGAAAGGGTTGCCCAAATCTGAAAATTGCACACCTTCACAAGTGTGCCTTTCTGTCAGACAATGGGTTGATATCGTTTGCTAAGGCTGCTTCTTCACTCCAGACCCTTCGATTGGAAGAGTGCCACAGAATCACCCAATTTGGGTTGTTTGGTGTCCTTTTTAACTGTGGTGGGAAATTGAAGGCCATCTCTGTGGTGAGATGCTACGGAATCAAAGACCTGAGTTTGGTGTTGCCGACTGTATCTCCTTGTGAATCACTTAGGTCATTGACTATCTCCAACTGCCCTGGATTTGGCAACGCCTCCCTCTCTGTACTGGGAAAGCTGTGCCCTAAGCTTCAGCATGTTGAACTGAGTGGACTAGATGGAGTGACTGATGCTGGGCTTCTTCCAGTGCTCGAGAGTTCTGAGGCTGGTTTGGTAAAAGTGAATCTCAGTGGTTGCACAAATGTCACAGACAAAGTAGTTTCATCCTTGGCCAATCTTCATGGTTGGACTCTTGAGAACCTAAACCTTGATGGTTGTAAAAACATCAGTGATGCTAGCTTGATGGCAATTGCTGAAAACTGTGCATTGCTATGCGATCTTGATGTCTCCAAGTGCTCAATCACTGATGCTGGGATAGCAGCCCTGGCACATGCCCAACAGATTAATCTGCAAATTCTCTCTTTGTCAGGTTGCGCTTTGGTCTCTGACAGGAGCTTGCCCGCCCTGAGAAAGGTGGGCAGGACCCTTTTGGGACTGAACATCCAGCACTGCAATGCAATTAACAGCAGCACGGTTGACATGCTTGTAGAGCTTCTCTGGAGGTGTGACATCCTCTCATAA 1932 0.4752 MSKVLGFSGGDDFCPGGSLYANPKEASFFLPLGPQVDVYFPPRKRSRVNAPFVFDGEWFEQKQKTSIESLPDECLFEIFRRLPAGEDRSACACVSKRWLMLLSSICKDEICVIKNSSAENIKKDGDDVEFGGEGYLSRSLEGKKATDVRLAAIAVGTASRGGLGKLSIRGTNMCRGVTSVGLKAVSHGCPSLKSLSLWNVSTVGDEGLMEIANGCHQLEKLDLCKCPAITDKALVAIAKNCQNLTELSLESCPNVGNEGLRAIGKFCPDLRSITIKDCTGVSDQGIAGLFSTSLVLTKVKLQALSVSDLSLAVIGHYGKSVTDLVLNCLPNVSEKGFWVMGNGSGLQKLKSLTVASCRGVTDIGLEAVGKGCPNLKIAHLHKCAFLSDNGLISFAKAASSLQTLRLEECHRITQFGLFGVLFNCGGKLKAISVVRCYGIKDLSLVLPTVSPCESLRSLTISNCPGFGNASLSVLGKLCPKLQHVELSGLDGVTDAGLLPVLESSEAGLVKVNLSGCTNVTDKVVSSLANLHGWTLENLNLDGCKNISDASLMAIAENCALLCDLDVSKCSITDAGIAALAHAQQINLQILSLSGCALVSDRSLPALRKVGRTLLGLNIQHCNAINSSTVDMLVELLWRCDILS* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0524 643 Gene3D Ribonuclease Inhibitor 255 441 IPR032675 -
Pvu1g0524 643 Gene3D Ribonuclease Inhibitor 135 254 IPR032675 -
Pvu1g0524 643 SUPERFAMILY F-box domain 63 104 IPR036047 GO:0005515
Pvu1g0524 643 SUPERFAMILY RNI-like 311 639 - -
Pvu1g0524 643 Gene3D Ribonuclease Inhibitor 566 641 IPR032675 -
Pvu1g0524 643 Gene3D Ribonuclease Inhibitor 445 503 IPR032675 -
Pvu1g0524 643 Gene3D Ribonuclease Inhibitor 504 565 IPR032675 -
Pvu1g0524 643 SMART LRR_CC_2 584 609 IPR006553 -
Pvu1g0524 643 SMART LRR_CC_2 346 371 IPR006553 -
Pvu1g0524 643 SMART LRR_CC_2 478 503 IPR006553 -
Pvu1g0524 643 SMART LRR_CC_2 215 240 IPR006553 -
Pvu1g0524 643 SMART LRR_CC_2 267 292 IPR006553 -
Pvu1g0524 643 SMART LRR_CC_2 372 397 IPR006553 -
Pvu1g0524 643 SMART LRR_CC_2 532 557 IPR006553 -
Pvu1g0524 643 SMART LRR_CC_2 558 582 IPR006553 -
Pvu1g0524 643 SMART LRR_CC_2 425 450 IPR006553 -
Pvu1g0524 643 SMART LRR_CC_2 398 423 IPR006553 -
Pvu1g0524 643 SMART LRR_CC_2 241 266 IPR006553 -
Pvu1g0524 643 SMART LRR_CC_2 452 477 IPR006553 -
Pvu1g0524 643 SMART LRR_CC_2 505 530 IPR006553 -
Pvu1g0524 643 SMART LRR_CC_2 189 214 IPR006553 -
Pvu1g0524 643 PANTHER UNCHARACTERIZED 17 634 - -
Pvu1g0524 643 SUPERFAMILY RNI-like 174 293 - -
Pvu1g0524 643 Gene3D - 60 110 - -
Pvu1g0524 643 PANTHER EIN3-BINDING F-BOX PROTEIN 1 17 634 - -
Pvu1g0524 643 Pfam Leucine Rich repeat 240 263 IPR001611 GO:0005515
Pvu1g0524 643 Pfam Leucine Rich repeat 564 580 IPR001611 GO:0005515
Pvu1g0524 643 Pfam F-box domain 68 107 IPR001810 GO:0005515
Pvu1g0524 643 SMART fbox_2 70 111 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0524 Pvu-Chr1 5735774 5739460 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0524 K14515 - gmx:100819226 1172.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0524 1 5735774 5739460 Pvu1g0524 1 5735774 5739460 ECH
Pvu1g0524 1 5735774 5739460 Pvu9g0956 9 14366308 14369849 PCT