Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0345 ATGTTGTGTCGTGCTCGTGTCTCCATGGCTCTCATCACTCGAACCGGAACCACGTGGCGCCTCCCTCAGCGGCTAGCTTCGGCGTCGCTCCTCCACAGCAGCTCCTCCGACGCGGTGGCTCCGACGAGTTATTGTGCGTCGCCGCCGACGTCGAAGTCCTCCCCCGTGGGGTTGTCGAAGCCGGCGGAGTTCGTGATCTCCAAGGTGGACAACCTCATGAACTGGGCCCGCGTGGGATCCATCTGGCCCATGACGTTTGGGCTGGCCTGCTGCGCCGTGGAGATGATGCACACGGGTGCGGCCCGTTACGATCTGGACCGCTTCGGAATCATCTTCAGGCCCAGCCCACGCCAGTCCGATTGCATGATCGTTGCTGGCACCCTCACCAACAAGATGGCCCCTGCCCTTCGCAAGGTTTATGATCAAATGCCAGAACCAAGGTGGGTGATATCAATGGGAAGCTGTGCTAATGGAGGTGGATATTATCACTATTCATACTCAGTTGTTAGAGGATGTGACAGGATTGTTCCTGTTGACATTTATCTTCCTGGTTGTCCTCCAACTGCTGAAGCTTTACTCTATGGCCTCCTTCAGCTCCAGAAGAAGATCAACAGGCGCAAGGACTTCCTCTGGTGGTGGACAAAGTGA 648 0.5664 MLCRARVSMALITRTGTTWRLPQRLASASLLHSSSSDAVAPTSYCASPPTSKSSPVGLSKPAEFVISKVDNLMNWARVGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYLPGCPPTAEALLYGLLQLQKKINRRKDFLWWWTK* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0345 215 PANTHER NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 7, MITOCHONDRIAL 15 215 - -
Pvu1g0345 215 TIGRFAM nuoB_fam: NADH-quinone oxidoreductase, B subunit 64 205 IPR006138 GO:0008137|GO:0048038|GO:0051539
Pvu1g0345 215 SUPERFAMILY HydA/Nqo6-like 63 212 - -
Pvu1g0345 215 Gene3D - 53 211 - -
Pvu1g0345 215 PANTHER NADH DEHYDROGENASE 15 215 - -
Pvu1g0345 215 ProSitePatterns Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 171 187 IPR006138 GO:0008137|GO:0048038|GO:0051539
Pvu1g0345 215 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 90 199 IPR006137 GO:0051536
Pvu1g0345 215 Hamap NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 56 204 IPR006138 GO:0008137|GO:0048038|GO:0051539
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0345 Pvu-Chr1 3290899 3292819 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0345 K03940 - gmx:100814025 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0345 1 3290899 3292819 Pvu1g0345 1 3290899 3292819 ECH
Pvu1g0345 1 3290899 3292819 Pvu9g0790 9 12595533 12599613 PCT