Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu11g1073 ATGGATTCTCCGTCGGCGAAGAAGGAGGTGAATGAGCCTTTGGCGGTGCCAGAAGAATCGTTACCACAACAACCTTCTTTTTCTCGATCTTTCAGCTCCAGACATGGATCATCCGGTGAACTTGAGCAGATACTCACAGACATCAGCCTCCCTTACTCAAAGCGTGTTGGAGCAGCAACATGGCTGGAGTTGAAGCTCCTGTTCAACCTTGCTGCTCCCGCTGTCATCGTCTACCTCCTCAACTATGTCATGTCTATGTCCACACAAATCTTCTGCGGCCACCTCGGCAACCTCGAACTTGCTGCATCTTCACTCGGAAACAATGGCATCCAGATTTTCGCTTATGGCCTCATGTTGGGTATGGGAAGTGCCGTTGAGACGCTATGCGGACAAGCATACGGAGCGAAGAAATACCACATGTTAGGGATATACCTGCAACGATCCACAGTGCTGCTCTCACTCGCAGGCGTTCTACTAACCATTATCTACGTCTTCGCGGAACCAATCCTACTGATGCTCGGCGAGTCGCCGGAAATCGCGTCGGCGGCGGCGCTTTTCGTGTACGGGCTCATCCCTCAGATCTTCGGCTACGCCGTGAACTTCCCCATCCAGAAGTACCTCCAGGCGCAGAGCATCGTGGCGCCGAGCTCGTACATTTCATGCGCCACGCTCGTGTTCCATCTGGTGTTTAGTTGGGTGGCGGTGCAGAAGCTGGGGATGGGCCTATTTGGCGCGGCGCTGGTGCTCAGTCTCTCCTGGTGGGTTATCGTGATCGCGCAGTTCATTTACATCGTGAAGAGTGAGAGGTGCAAGCAGACGTGGGGCGGCTTCAGCTTCGAAGCGTTTTCGGGGTTGCCGGAGTTTTTCAAACTCTCGGCGGCTTCGGCGGTGATGCTCTGCCTAGAGACGTGGTACTTTCAAATTCTCGTGCTGCTCGCGGGGTTGCTTCCTCAGCCGGAGTTGGCTCTCGATTCCCTTTCCATTTGTACCACAATTTCTGGATGGGTGTTCATGATCTCAGTTGGGTTTAACGCAGCTGCAAGTGTGAGAGTGAGCAACGAGCTAGGAGCAAGAAATCCAAAATCAGCGTCATTTTCTGTGGTGGTGGTGACAGTGATATCTTTCATAATATCGGTTATTGTAGCAGTGGTGATTTTGTTACTGAGAGATGTCATTAGCTATGCCTTCACCGAAGGCGAAGAGGTGGCTGCTGCTGTATCAGATCTTTGTCCCCTTCTTGCTCTTTCCATTGTTCTCAACGGCATTCAACCTGTTTTGTCTGGGGTGGCTGTTGGATGTGGATGGCAAACTTTTGTTGCGTACGTGAACGTTGGTTGTTATTATGGAATTGGCATTCCATTGGGTGCGGTTATGGGTTTCTATTTCAAATTCAATGCAAAGGGAATATGGTTGGGAATGCTTGGTGGCACAGTCTTGCAAACCCTTATTTTAATGTGGGTCACATTTAGAACTGATTGGAATAAAGAGGTTGTGGAAGCAGAAAGGAGGTTGAATCAGTGGGAAGACGTGAAGGAGCCACTTCTGAAGAACTGA 1554 0.5058 MDSPSAKKEVNEPLAVPEESLPQQPSFSRSFSSRHGSSGELEQILTDISLPYSKRVGAATWLELKLLFNLAAPAVIVYLLNYVMSMSTQIFCGHLGNLELAASSLGNNGIQIFAYGLMLGMGSAVETLCGQAYGAKKYHMLGIYLQRSTVLLSLAGVLLTIIYVFAEPILLMLGESPEIASAAALFVYGLIPQIFGYAVNFPIQKYLQAQSIVAPSSYISCATLVFHLVFSWVAVQKLGMGLFGAALVLSLSWWVIVIAQFIYIVKSERCKQTWGGFSFEAFSGLPEFFKLSAASAVMLCLETWYFQILVLLAGLLPQPELALDSLSICTTISGWVFMISVGFNAAASVRVSNELGARNPKSASFSVVVVTVISFIISVIVAVVILLLRDVISYAFTEGEEVAAAVSDLCPLLALSIVLNGIQPVLSGVAVGCGWQTFVAYVNVGCYYGIGIPLGAVMGFYFKFNAKGIWLGMLGGTVLQTLILMWVTFRTDWNKEVVEAERRLNQWEDVKEPLLKN* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu11g1073 517 PANTHER MULTIDRUG RESISTANCE PROTEIN 18 504 - -
Pvu11g1073 517 MobiDBLite consensus disorder prediction 1 36 - -
Pvu11g1073 517 PANTHER PROTEIN DETOXIFICATION 18 504 - -
Pvu11g1073 517 Pfam MatE 73 233 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pvu11g1073 517 Pfam MatE 295 456 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pvu11g1073 517 Coils Coil 490 510 - -
Pvu11g1073 517 TIGRFAM matE: MATE efflux family protein 73 470 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pvu11g1073 517 MobiDBLite consensus disorder prediction 21 36 - -
Pvu11g1073 517 CDD MATE_eukaryotic 63 497 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu11g1073 Pvu-Chr11 11872156 11878302 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu11g1073 K03327 - gmx:100801718 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g1073 11 11872156 11878302 Pvu11g1073 11 11872156 11878302 ECH
Pvu5g1189 5 33257215 33261962 Pvu11g1073 11 11872156 11878302 PCT