Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1600 ATGGAGGCCTTGCACTTGCACCGCGTGCTTCCCATGCCTGTTCCTCAAAATTCCATCTTTTGGCGCGCAACTGCAACCCCATTATCCACAGTTCCCATTGCAAGGCCACCATTGCGTTGGAAATCAGCATCCTCCCAAACTTGCACTGCCAGAGCAGGGTGGTTTTTGGGTCTTGGAGCAGACACCAAGAAGACAAATTTACCTGACACTGTCAAAGCCGGTGACCCTGTTCTTCACGAGCCCGCTCGGGAAGTTGATCCCAATGAGATAAATTCGGAGAAAGTGCAGAATATCATTGATAACATGATTAGGGTCATGAGGAATGCTCCTGGAGTTGGTCTAGCTGCTCCCCAGATTGGAATTCCTTTCAGGATAATTGTTTTGGAAGATACCAAAGAGTATATTAGTTATGTACCGAAGGAAGAGGCTAAAGTTCAAGATAGAAGGCCTTTTGATCTTTTGGTCATCCTGAATCCCAAGCTAGAGAAGAAGACCAAGAAGACTGCTCTATTTTTTGAAGGGTGCTTGAGTGTTGATGGGTTTAGAGCACTGGTGGAAAGATCCCTTGATGTTGAGGTCACAGGTTTGGATCGCTATGGTGTGCCAATCAAAATAAACGCATCTGGGTGGCAGGCCAGGATTTTACAACATGAATGTGATCACTTGGAGGGAACTCTGTATGTTGATAAGATGGTACCTAGAACTTTCAGAACTGTGGACAACATGGACCTGCCTCTTGCTCAGGGATGCCCTAAACTTGGTCCTCGTTAA 771 0.463 MEALHLHRVLPMPVPQNSIFWRATATPLSTVPIARPPLRWKSASSQTCTARAGWFLGLGADTKKTNLPDTVKAGDPVLHEPAREVDPNEINSEKVQNIIDNMIRVMRNAPGVGLAAPQIGIPFRIIVLEDTKEYISYVPKEEAKVQDRRPFDLLVILNPKLEKKTKKTALFFEGCLSVDGFRALVERSLDVEVTGLDRYGVPIKINASGWQARILQHECDHLEGTLYVDKMVPRTFRTVDNMDLPLAQGCPKLGPR* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1600 256 Gene3D Peptide deformylase 66 255 IPR036821 -
Pvu10g1600 256 PRINTS Peptide deformylase signature 100 129 IPR023635 GO:0042586
Pvu10g1600 256 PRINTS Peptide deformylase signature 173 184 IPR023635 GO:0042586
Pvu10g1600 256 PRINTS Peptide deformylase signature 185 203 IPR023635 GO:0042586
Pvu10g1600 256 PRINTS Peptide deformylase signature 204 233 IPR023635 GO:0042586
Pvu10g1600 256 TIGRFAM pept_deformyl: peptide deformylase 71 233 IPR023635 GO:0042586
Pvu10g1600 256 Hamap Peptide deformylase [def]. 66 242 IPR023635 GO:0042586
Pvu10g1600 256 Pfam Polypeptide deformylase 71 234 IPR023635 GO:0042586
Pvu10g1600 256 CDD Pep_deformylase 71 227 IPR023635 GO:0042586
Pvu10g1600 256 PANTHER PEPTIDE DEFORMYLASE 40 256 IPR023635 GO:0042586
Pvu10g1600 256 PANTHER PEPTIDE DEFORMYLASE 40 256 - -
Pvu10g1600 256 SUPERFAMILY Peptide deformylase 69 239 IPR036821 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1600 Pvu-Chr10 42346466 42349550 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1600 K01462 - gmx:100784292 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1600 10 42346466 42349550 Pvu10g1600 10 42346466 42349550 ECH
Pvu5g1817 5 39904755 39907258 Pvu10g1600 10 42346466 42349550 PCT