Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1580 ATGCCTTCACTCTCAGAAGCCTTTCAAGATCACCCTGTCTATCTTCACCACCACAAGCACCCTGACTTCAACTCTCTGCAACAACAATTCCCCGAATCTTACGCATGGACACAACCAGATTCTGATCATCATCATCATTATTCCGATAACACCACCACCAACACTGTCCCTGTCATCGATTTCAAGGACCCTAATGCTTCAAACCTCATAGGGCATGCATGCAAAACATGGGGTGTGTTCCAACTGGTCAACCATGGCATCCCCATCAAGCTCTTCACTGACATTCAGACGGCTTGTCTTGCCTTGTTCTCTCTTCCTCTTCACCAGAAGCTCAAAGCTGCTCGCTCCCCCGACGGCGTCGCCGGCTATGGCCGCGCCCGCATCTCCTCCTTCTTCCCCAAACTCATGTGGTCTGAGTGCTTCACCATTCTCGACTCCCCTCTCCACCTCTTTCTCCAACTCTGGCCCCAAGAATATGCTAAATACTGTGAGATTGTGAAGGAATATGAAGCAGCCATGAAAAAACTAGCAGCGAAGCTAATGTGCCTTGTCTTGGCTTCCCTTGGTATTTCGAAGGAAGATATTAAATGGGCCGGGCCGAGAGGAGAGTTCAACGGGGCTTGCGCGGCCCTACATTTGAATTCTTACCCGAGTTGCCCGGATCCGGATCGGGCCATGGGTCTGGCGGCCCACACGGACTCCACGCTGCTCACAATTCTGCACCAAAACAACGTGAGTGGGCTTCAGGTTCTGAAGGACGGCGAAGGGTGGGTGGCGCTGCCGCCGCTTGCCGGAGGGCTGGTGATTAACATTGGCGATCTGCTCCATATTTTGTCAAACGGGTTGTACCCGAGTGTGCTCCATCGGGTGCGGGTGAACCGGAGCCGGCAAAGGTTCTCAGTTGCTTATCTATATGGGCCCCCAACAAACGTGGAGATCAGTCCAAATGAGAAATTGGTAGGCCCAGGTAGGCCCAGTCTATTTCAATCGGTGACTTGGAACGAGTACCTTGGGAAAAAAGCAAAGCATTTCAATAAGGCTCTCTCTGCGGTTAGGGTTTCTTCCTCTATTAACGGTTTATTTGATGTAAACGAGGATCAGAACAACGACTTTCAAGTGGGCTAG 1125 0.5138 MPSLSEAFQDHPVYLHHHKHPDFNSLQQQFPESYAWTQPDSDHHHHYSDNTTTNTVPVIDFKDPNASNLIGHACKTWGVFQLVNHGIPIKLFTDIQTACLALFSLPLHQKLKAARSPDGVAGYGRARISSFFPKLMWSECFTILDSPLHLFLQLWPQEYAKYCEIVKEYEAAMKKLAAKLMCLVLASLGISKEDIKWAGPRGEFNGACAALHLNSYPSCPDPDRAMGLAAHTDSTLLTILHQNNVSGLQVLKDGEGWVALPPLAGGLVINIGDLLHILSNGLYPSVLHRVRVNRSRQRFSVAYLYGPPTNVEISPNEKLVGPGRPSLFQSVTWNEYLGKKAKHFNKALSAVRVSSSINGLFDVNEDQNNDFQVG* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1580 374 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 3 365 - -
Pvu10g1580 374 SUPERFAMILY Clavaminate synthase-like 27 344 - -
Pvu10g1580 374 Gene3D - 23 347 IPR027443 -
Pvu10g1580 374 Pfam non-haem dioxygenase in morphine synthesis N-terminal 56 146 IPR026992 -
Pvu10g1580 374 Pfam 2OG-Fe(II) oxygenase superfamily 211 307 IPR044861 -
Pvu10g1580 374 PRINTS Isopenicillin N synthase signature 70 87 - -
Pvu10g1580 374 PRINTS Isopenicillin N synthase signature 267 293 - -
Pvu10g1580 374 PANTHER GIBBERELLIN 3-BETA-DIOXYGENASE 1-LIKE 3 365 - -
Pvu10g1580 374 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 206 307 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1580 Pvu-Chr10 42196320 42198613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1580 56 351 Glycosyltransferase AT5G59530 28.254 2.77e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1580 K04124 - gmx:100794180 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1580 10 42196320 42198613 Pvu10g1580 10 42196320 42198613 ECH
Pvu5g1790 5 39675367 39677505 Pvu10g1580 10 42196320 42198613 PCT