Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1484 ATGGTTGTCAAAATGTGGTTCCATTTGTTCATCCTTTTCCATGTCTTCTCTGCAACTCCAATCTCCTCATTAACAGATTCCTCGAACATAATCTCTACTAACTTTCTTGACGATGCCAAGAAGCCTGAAGTTTTTGATTGGATGGTGAAACTCAGAAGGAAGATTCATGAGAACCCAGAATTGCTTTATGAGGAATTTGAGACCAGTAAACTGATCAGAGAGGAATTGGATAAACTGGGTATCCCATATAAACACCCAGTTGCTGTCACTGGTGTAATTGGTTTCATTGGAACAGGAAGCTCACCTTTTGTTGCATTAAGAGCTGACATGGATGCACTTCCCATCCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTACCAGGAAAGATGCATGCTTGCGGTCATGATGCTCATGTCAGTATACTTCTTGGAGCAGCAAAGATTCTCAAACAGCATGAAAAAGAGATACAGGGAACTGTAGTTCTTGTTTTCCAACCAGCAGAGGAGGGAGGTGGAGGGGCAAAGAAAATTGTAGATGCTGGAGTCTTGGAAAATGTTACTGCTATCTTTGGACTACATGTGATACCCAGTACTTCAGTAGGGGAAGTGGTCACAGGGTCTGGTCCAATGATGGCCGGAAGTGGTGCCTTTGAAGCAATTATTAGTGGAAAGGGTGGTCATGCAGCTATTCCCCAACATTCTAGAGACCCTGTATTGGCTGCTTCTAATGTGGTTATCAGCTTACAGCACCTTGTTTCTCGCGAGGCTGATCCTGTGGAACCCCAGGTGTTGACAGTTACAATATTCCAAGGAGGTGGTGCATTCAATGTTATTCCAGATAAAGTCACAATTGGTGGCACTTTCCGAGCTTTTTCTAAAGAAAGATTGGAGCAACTTGCACAGCGCATTGAGCAGGTTGCCATTGGTCAAGCTGCTGTGCAGAGGTGTAACGCAACTGTGTGGTTCGGTGATGAAACGAATGGTTTCTACCCTCCAGTTGTAAATAATGGTGACTTGCACAAGTTTTTTGTTGATGTTGCTGGGAATCTGCTAGGCATCAATAAAGTTAATACTGATGTCAGACCAATCATGGCCTCTGAAGACTTTGCTTTTTATCAAGAGGTCATACCTGGCTACTTCACTGGGCTTGGAGTGAAGAGTGCATCACCTGAACCGGTTCATGAATTACACTCACCCTATCTCACAATCAATGAAGATGCACTTCCTTATGGGGCTGCACTTCAGGCATCACTAGCTACTACTTATCTTATAAATATCAGCAGAATGTAG 1293 0.437 MVVKMWFHLFILFHVFSATPISSLTDSSNIISTNFLDDAKKPEVFDWMVKLRRKIHENPELLYEEFETSKLIREELDKLGIPYKHPVAVTGVIGFIGTGSSPFVALRADMDALPIQEMVEWEHKSKVPGKMHACGHDAHVSILLGAAKILKQHEKEIQGTVVLVFQPAEEGGGGAKKIVDAGVLENVTAIFGLHVIPSTSVGEVVTGSGPMMAGSGAFEAIISGKGGHAAIPQHSRDPVLAASNVVISLQHLVSREADPVEPQVLTVTIFQGGGAFNVIPDKVTIGGTFRAFSKERLEQLAQRIEQVAIGQAAVQRCNATVWFGDETNGFYPPVVNNGDLHKFFVDVAGNLLGINKVNTDVRPIMASEDFAFYQEVIPGYFTGLGVKSASPEPVHELHSPYLTINEDALPYGAALQASLATTYLINISRM* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1484 430 PANTHER AUXIN CONJUGATE HYDROLASE 1 428 - -
Pvu10g1484 430 SUPERFAMILY Zn-dependent exopeptidases 43 425 - -
Pvu10g1484 430 Gene3D - 213 331 - -
Pvu10g1484 430 TIGRFAM amidohydrolases: amidohydrolase 48 411 IPR017439 GO:0016787
Pvu10g1484 430 SUPERFAMILY Bacterial exopeptidase dimerisation domain 214 321 IPR036264 -
Pvu10g1484 430 CDD M20_IAA_Hyd 48 424 IPR044757 GO:0009850|GO:0016787
Pvu10g1484 430 PANTHER PEPTIDASE M20 FAMILY MEMBER 1 428 IPR017439 GO:0016787
Pvu10g1484 430 PIRSF Amidohydrol_AmhX 33 426 IPR017439 GO:0016787
Pvu10g1484 430 Pfam Peptidase family M20/M25/M40 105 420 IPR002933 GO:0016787
Pvu10g1484 430 Pfam Peptidase dimerisation domain 214 308 IPR011650 -
Pvu10g1484 430 Gene3D Zn peptidases 48 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1484 Pvu-Chr10 41460548 41463479 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1484 K21604 K14664 gmx:121172631 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1484 10 41460548 41463479 Pvu10g1484 10 41460548 41463479 ECH
Pvu5g1666 5 38670869 38672151 Pvu10g1484 10 41460548 41463479 PCT