Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1246 ATGTCTTTCACTGCAACCAAGTTTGCTCCCTCTCCTCTCCCTCTCAGTTCCACCACCCCCAGATCCAATGACAAGCCTCTCTCTTTCTCCTTCGATCACTCCAAAGCCAACCCTTCTTCTTCCTCTTTTCTTGGATCCACTCGCAAGCTTCTTCGCTTCAGGGCTCCTGCCAAGCCTCGTTCTTCTTCCCCTGTTGCTGCTGTTCTTCTCCAACAAACTTCCAATCTGCTTATTACTAAAGAGGAAGGGTTGGAGCTCTATGAAGACATGATACTAGGGAGGTTCTTCGAGGACAAGTGTGCTGAGATGTATTATAGGGGCAAAATGTTTGGTTTTGTTCACTTGTACAATGGCCAAGAGGCTGTGTCAACTGGATTCATCAAACTTTTGAAGAAGGAGGATTATGTAGTGAGCACCTACAGAGATCATGTTCATGCATTGAGTAAGGGTGTCTCCTCTCGGGCTGTAATGAGTGAACTGTTTGGAAAGGCAACAGGATGCTGCCGTGGTCAGGGCGGTTCAATGCATATGTTCTCAAAAGAGCACAACATGCTTGGCGGTTTTGCATTCATTGGTGAAGGAATTCCAGTGGCCACTGGGGCTGCATTTTCGAGCAAGTACAGAAGGGAGGTGCTGAATCAGGCAGATGCTGATCAGGTGACACTGGCTTTTTTCGGAGATGGGACTTGTAACAATGGTCAATTCTATGAATGCCTGAACATGGCAGCTCTATGGAAATTGCCAATTGTGTTTGTGGTGGAGAATAATTTGTGGGCTATTGGGATGTCGCATCTCAGAGCAACTTCAGATCCTCAGATATGGAAGAAAGGGCCAGCTTTTGGAATGCCAGGGGTTCATGTTGATGGGATGGATGTTTTGAAGGTCAGAGAGGTGGCAAAGGAGGCAATTGGAAGGGCTAGAAGGGGAGAGGGACCAACTCTCGTGGAATGTGAGACCTATAGATTTAGAGGACATTCATTGGCTGACCCTGATGAGCTTCGCGACCCAGCTGAGAAGGAATACTATGCTGCTAGGGACCCCATCACTGCACTGAAACAATACCTTGCTGAAAACAATTTAGCCAGTGAGCAAGAACTGAAGGCCATAGAGAAGAAAATCGATGAGATTCTTGATGATGCAGTTGAGTTTGCAGACAATAGCCCTCTTCCACCCCGTAGTCAGCTTCTGGAGAATGTGTTTGCTGATCCAAAAGGCTTTGGAATTGGACCAGATGGAAAGTATAGATGTGAGGATCCAAAATTCACTGAAGGCACTGCTCAAGTCTAA 1287 0.4678 MSFTATKFAPSPLPLSSTTPRSNDKPLSFSFDHSKANPSSSSFLGSTRKLLRFRAPAKPRSSSPVAAVLLQQTSNLLITKEEGLELYEDMILGRFFEDKCAEMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDYVVSTYRDHVHALSKGVSSRAVMSELFGKATGCCRGQGGSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLNQADADQVTLAFFGDGTCNNGQFYECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIGRARRGEGPTLVECETYRFRGHSLADPDELRDPAEKEYYAARDPITALKQYLAENNLASEQELKAIEKKIDEILDDAVEFADNSPLPPRSQLLENVFADPKGFGIGPDGKYRCEDPKFTEGTAQV* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1246 428 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA 5 428 - -
Pvu10g1246 428 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 5 428 - -
Pvu10g1246 428 Coils Coil 359 386 - -
Pvu10g1246 428 MobiDBLite consensus disorder prediction 1 43 - -
Pvu10g1246 428 CDD TPP_E1_PDC_ADC_BCADC 86 384 - -
Pvu10g1246 428 Pfam Dehydrogenase E1 component 90 390 IPR001017 GO:0016624
Pvu10g1246 428 TIGRFAM PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 80 401 IPR017597 GO:0004739|GO:0006086|GO:0043231
Pvu10g1246 428 Gene3D - 54 410 - -
Pvu10g1246 428 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 73 403 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1246 Pvu-Chr10 38847999 38851283 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g1246 5 428 Acyl Lipid Metabolism Gene Families AT1G01090 79.630 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1246 K00161 - gmx:100811207 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1246 10 38847999 38851283 Pvu10g1246 10 38847999 38851283 ECH
Pvu9g2662 9 37047379 37050660 Pvu10g1246 10 38847999 38851283 PCT