Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1215 ATGAGTGTTTACAGCACCGTATTGCTCGTAATCCTCAGTTTGGTGGTAGGTTTCGTAATTCGGCGGTTGCTGTTCAAAACGGGATTGATACACAGCATAAGGAAACTCTTGAGAAGGGTTCAGGATTGGTTCCACGTCTACCAGTTCCTCAAAGTCCCTGAATTCAATGAAGCCATGCAGCGGAATCACCTTCACCGCAAAGTGTCTCTCTATTTGCATTCTCTTCCTTCAATAGAAGATGCTGACTTCACCAATCTCGTTTCAGGTTACGACCAAAACGACATCGTTTTGCGCCTCGAACCTAACCAAACCATCCAGGACAATTTCCTCGGGGCCACACTCTTCTGGTTCGAACAAAAAACCGAACCGGAACGGATTTCCTCCTTCGTTCTCAAAATCAGAAAAACAGATAAACGCCGAATCCTACGCCAGTACCTCCGCCATATCAATACCGTTGCCGACGAGATGGAGAACCAAAGGAAGCGCCATTTGCGGTTGTTCATGAACGCCGCGGCGACCGAAGGCGGTACGGGAGAAACACGGTGGAGATCAGTTCCGTTCACTCATCCAGCGACTTTTGAAACGATAGTGATGGAAAAGGATCTTAAGAACAAAATCAAATCTGATATGGAATCGTTTCTCAAAGCGAAGCAATACTACCGTAAACTCGGCCGCGCGTGGAAGCGGAGCTTCCTATTGTACGGTTCCTCCGGCACCGGAAAGTCGAGCTTCGTCGCTGCGATGGCGAACTTCCTCCGCTACGACGTGTACGACGTGGACCTCTCGAAGATTCGCGGCGATTCGGATCTTAAGTTTCTCCTAATGGAAACGACGGCGAAGTCGGTCGTCGTAGTAGAGGATCTCGACAGATTTCTCGTACCGGAAAAGGAATCTGCAGTTACGGAGAGGGGGATCCAGAGCTTCATGGACGGGATTCTGAGCGCGTGTTGTGGTGAGGAGAGGGTAATGGTGTTCACGATGAACAGCAAGGAGTTCGTGAACCCAAACTTGATGCGCCCGGGTCGGGTCGACGTGCACATCCACTTTCCGGTGTGCGATTTCTCGGCATTCAAGACGCTTGCAAGCAGTTACCTCGGCGTTAGGGAGCACAAGCTTTTCGCGCAGGTGGAGAATATTTTCCGGCACGGTGGCAGTCTCAGCCCCGCCGAGATCAGCGAGTTGATGATCGCGAACCGGAACTCGCCGAGTCGGGCCATAAAGTCGGTAATCGGGGCGCTCCAATCGGACGGTGATGGGAGAAAGTACGCGGACAAGATCGAACGGCACCTAGGGGTTGATGACGTGGACGAACCGTCCTTTGGTGGGGACGAGTTATCTACGGTTAAGGATTTGCGGAAGTTTTACAGTTTCTTCAAAAAACGGAACGCCAGAAGAGTCAGCTACCCCAAAGTCCAACACCTTGGCCCATGTTAG 1434 0.5132 MSVYSTVLLVILSLVVGFVIRRLLFKTGLIHSIRKLLRRVQDWFHVYQFLKVPEFNEAMQRNHLHRKVSLYLHSLPSIEDADFTNLVSGYDQNDIVLRLEPNQTIQDNFLGATLFWFEQKTEPERISSFVLKIRKTDKRRILRQYLRHINTVADEMENQRKRHLRLFMNAAATEGGTGETRWRSVPFTHPATFETIVMEKDLKNKIKSDMESFLKAKQYYRKLGRAWKRSFLLYGSSGTGKSSFVAAMANFLRYDVYDVDLSKIRGDSDLKFLLMETTAKSVVVVEDLDRFLVPEKESAVTERGIQSFMDGILSACCGEERVMVFTMNSKEFVNPNLMRPGRVDVHIHFPVCDFSAFKTLASSYLGVREHKLFAQVENIFRHGGSLSPAEISELMIANRNSPSRAIKSVIGALQSDGDGRKYADKIERHLGVDDVDEPSFGGDELSTVKDLRKFYSFFKKRNARRVSYPKVQHLGPC* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1215 477 PANTHER BCS1 AAA-TYPE ATPASE 8 445 - -
Pvu10g1215 477 Gene3D - 183 351 IPR027417 -
Pvu10g1215 477 PANTHER BNAC04G00800D PROTEIN 8 445 - -
Pvu10g1215 477 Pfam ATPase family associated with various cellular activities (AAA) 232 350 IPR003959 GO:0005524|GO:0016887
Pvu10g1215 477 Coils Coil 142 162 - -
Pvu10g1215 477 SMART AAA_5 227 353 IPR003593 -
Pvu10g1215 477 CDD AAA 228 350 - -
Pvu10g1215 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 409 IPR027417 -
Pvu10g1215 477 Pfam Domain associated at C-terminal with AAA 30 116 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1215 Pvu-Chr10 38325473 38327550 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1215 - K08900 gmx:100787809 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1215 10 38325473 38327550 Pvu10g1215 10 38325473 38327550 ECH
Pvu6g1211 6 23090658 23092694 Pvu10g1215 10 38325473 38327550 PCT