Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g1040 ATGTCAGAAACTGACTTGGCAGTTATTAAACCTGAGATGATGAAGCCTTATGTCTGGCTTCAGACTTCAGACGATTCAATCCAACAAGTGGAACAAGAAATTGCAATGTTTTGCCCACTTATATGTCAAGAAATAATACAAAAAGGCATGGGATCTTCCAAGAATTGTGCAATATGTCTTCCTCAACAAGTCAGTCCTTCCATGTTGAGCTTAATTCTTGATTATTGTCGTTTTCATCAAGTACCAGGCCGGTCAAACAAGGAACGTAAATCTTATGACGAGAAGTTTGTTAGGATAGACACAGAGAGGCTTTGTGAATTGACATCTGCTGCAGACAGCCTTCAGTTAAAACCGTTGGTTGATCTAACCAGCCGTGCACTTGCTCGAATAATTGAAGGGAAGACGCCAGAGGAGATACGTGATATATTTCATTTGCCTGATGATCTTACAGAGGAAGAAAAGTTGGAGCCATTGAGAAATATAACTGCTGATCCAAGGATCAGGCTTTTGAATCGTTTGTATGCCAAAAAGAGAAAAGAACTAAGAGAGCGCGAAAGGTTAAAGAATGTTGAAGTTGAAGAAGAACATGTGGATGATCGTTCAGTTGACGACCTATTGTCTTTTATCAATGGAAAGGATGGAGATCCAAAGGGAGTTAAAACTTCAAAGAATAAAAAAAAGAACCGGAGGAAAAAAGAGCAACAGAAGAACTCTTCTTTGAAGGAGGCATCTGAACTGAACAAGAAGGAGGCAAATGGTCATGATATCAGACACCAAAGTTCTGAAGCTGAGAGAATAAGTGAGACCTCCCATTTACATGATGCAGAGGATGATGCTTTTACTTCTAAGCCTGAGTTTGATGATGGTGATATGGATGATGAGATTGATCCTGCTTTAAAAGAAAAGATTGACAGGGAAGTGGAAGATTTTGCCCGAAGATTAAATTCTGACTGGCCAGAAAGAATGCAAGAACTTTTATCTTCAGGGCAAGAACGGAAGACGATGCTTTTCACTACAGATGGGTTTTTAAGGCGACATGCTTGA 1044 0.3975 MSETDLAVIKPEMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGMGSSKNCAICLPQQVSPSMLSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRDIFHLPDDLTEEEKLEPLRNITADPRIRLLNRLYAKKRKELRERERLKNVEVEEEHVDDRSVDDLLSFINGKDGDPKGVKTSKNKKKNRRKKEQQKNSSLKEASELNKKEANGHDIRHQSSEAERISETSHLHDAEDDAFTSKPEFDDGDMDDEIDPALKEKIDREVEDFARRLNSDWPERMQELLSSGQERKTMLFTTDGFLRRHA* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g1040 347 PANTHER SKP1 1 280 IPR016897 GO:0006511
Pvu10g1040 347 Pfam Skp1 family, tetramerisation domain 18 80 IPR016073 GO:0006511
Pvu10g1040 347 Gene3D Potassium Channel Kv1.1; Chain A 12 161 IPR011333 -
Pvu10g1040 347 PANTHER SKP1-LIKE PROTEIN 20 1 280 - -
Pvu10g1040 347 SUPERFAMILY Skp1 dimerisation domain-like 90 159 IPR036296 GO:0006511
Pvu10g1040 347 SUPERFAMILY POZ domain 16 80 IPR011333 -
Pvu10g1040 347 Coils Coil 223 249 - -
Pvu10g1040 347 Coils Coil 170 190 - -
Pvu10g1040 347 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
Pvu10g1040 347 SMART skp1_3 15 116 IPR001232 GO:0006511
Pvu10g1040 347 MobiDBLite consensus disorder prediction 235 286 - -
Pvu10g1040 347 MobiDBLite consensus disorder prediction 207 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g1040 Pvu-Chr10 35475200 35488342 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g1040 - - gmx:100794666 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g1040 10 35475200 35488342 Pvu10g1040 10 35475200 35488342 ECH
Pvu10g1040 10 35475200 35488342 Pvu8g0630 8 5615135 5623427 ECH
Pvu8g0630 8 5615135 5623427 Pvu10g1040 10 35475200 35488342 PCT