Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0604 ATGGCTATGAACATAAGGGCTTGTGTGGCTGCTGGTTGGAGATGGATAGAGAGGTTACGTAGAGCTGGAGTTATAAGTGGAAGACTCTATGTTGTTTGGTGGTCCTTTGCTGGTCTTTCTTTGGTGCTCTCTTTGTTGACAAGTACATTAGTTGATAAAGTGAGGCGTGGAGGTCTTTTTGTGAAGGGTAATGGAATAAAGGTGAAAGGTAGGAAGTATAGGTGTGGATGTAGGTGGAATAGCTGGAATCATTTCCACGAACATATTAATGAGACAATCATCAGAGAAGCAGCTGATGCTCTTGTTTCTTCTGGTCTTTCTGAGCTTGGATACACTTATGTTAACATAGATGATGGCTGGGGTGAAATGAGTCGAGATCTCGATGGTAATTTGGTAGCTGATAAAACAAAATTTCCTTCTGGTATCAAAGCTCTAGCAGATTATGTTCATGAGAATGGTCTGAAGCTTGGCATTTATTCAGATGCAGGGTATTATACTTGTGCAAAACGTATGCCTGGTTCACTTGGTTATGAAGAGCAAGATGCCAAGACTTTTGCATCATGGGGTGTTGATTATCTCAAGTATGATAATTGTAACAATGGTGGAATAAAGCCTCTTGATAGATATCCTATTATGACTCGAGCTTTGATGAAGGCAGGCCGTCCAATCTACTTCTCAATATGTGAATGGGGAGACATGCACCCTGCATTATGGGGTTATCCAGTGGGAAATAGCTGGAGAACTACTGATGACATTACTGATAACTGGGAAAGAATGCTTTCAAGGATAGACACCAATGATGTTTATGCTGATTTTGCAAAACCTGGTGGTTGGAATGATCCTGACATGCTGGAGGTAGGAAATGGAGGGATGAAGAAACATGAATACATTGTTCACTTCAGTTTATGGGCCATTTCCAAG 921 0.4115 MAMNIRACVAAGWRWIERLRRAGVISGRLYVVWWSFAGLSLVLSLLTSTLVDKVRRGGLFVKGNGIKVKGRKYRCGCRWNSWNHFHEHINETIIREAADALVSSGLSELGYTYVNIDDGWGEMSRDLDGNLVADKTKFPSGIKALADYVHENGLKLGIYSDAGYYTCAKRMPGSLGYEEQDAKTFASWGVDYLKYDNCNNGGIKPLDRYPIMTRALMKAGRPIYFSICEWGDMHPALWGYPVGNSWRTTDDITDNWERMLSRIDTNDVYADFAKPGGWNDPDMLEVGNGGMKKHEYIVHFSLWAISK 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0604 307 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 77 307 IPR002241 GO:0004553|GO:0005975
Pvu10g0604 307 SUPERFAMILY (Trans)glycosidases 79 306 IPR017853 -
Pvu10g0604 307 Gene3D Aldolase class I 73 307 IPR013785 -
Pvu10g0604 307 PANTHER ALPHA-GALACTOSIDASE 77 307 - -
Pvu10g0604 307 ProSitePatterns Alpha-galactosidase signature. 110 126 IPR000111 GO:0004553|GO:0005975
Pvu10g0604 307 CDD GH27 79 307 IPR002241 GO:0004553|GO:0005975
Pvu10g0604 307 PRINTS Glycosyl hydrolase family 27 signature 69 88 IPR002241 GO:0004553|GO:0005975
Pvu10g0604 307 PRINTS Glycosyl hydrolase family 27 signature 105 120 IPR002241 GO:0004553|GO:0005975
Pvu10g0604 307 PRINTS Glycosyl hydrolase family 27 signature 146 167 IPR002241 GO:0004553|GO:0005975
Pvu10g0604 307 PRINTS Glycosyl hydrolase family 27 signature 181 198 IPR002241 GO:0004553|GO:0005975
Pvu10g0604 307 PRINTS Glycosyl hydrolase family 27 signature 208 226 IPR002241 GO:0004553|GO:0005975
Pvu10g0604 307 PRINTS Glycosyl hydrolase family 27 signature 273 292 IPR002241 GO:0004553|GO:0005975
Pvu10g0604 307 PRINTS Glycosyl hydrolase family 27 signature 294 307 IPR002241 GO:0004553|GO:0005975
Pvu10g0604 307 Pfam Alpha galactosidase A 76 305 IPR002241 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0604 Pvu-Chr10 9692101 9694713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0604 20 307 Glycoside Hydrolase AT5G08380 62.373 9.23e-132 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0604 K07407 - gmx:100789787 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0604 10 9692101 9694713 Pvu8g0824 8 7789234 7792998 PCT