Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0513 ATGGCCACTGCCAATCCCTTTGATTTGTTGGGCGACGATGCCGAGGACCCGTCGCAGTTGATCGTGACCGAGCAGTTGAAGGCCGCCGCGGCGCCCAAGAAGGAGCAGAGCAAGCCGGCTCAGTTGCCTTCCAAGCCAATCCCTCCCACTCAGGCTGCGAGGGAGGCAAAAAATGAAGCTTCTTATGGTGGCCGTGGAGGTGGACGAGGAGGTGGACGAGGATATGGACGAGGAGGACGTGGTGGTGGCTTTGGTCGTGATTTTTCCAATGACGAGAACTCATCTGTCCCTGTTAACCAAGGATCTTTTGAAGGAGAGGCTGGAAATACCTCAGAAAGAAGTGGTTATGGTGCACCACGCGGGCCCTATCGTGGCGGTGGTCGTGGTCGTCGTGGAGGCTTTAGCAATGGTGAAGTTGGTGAAGATGGACGCCCAAGAAGGGCCTTTGAACGCCACAGTGGGACTGGACGAGGAAATGATCTCAAAAGGGATGGTGCTGGACGAGGAAACTGGGGTACCCAGTCTGATGATATTGCTCAGGTGACTGAGGAAGTGGGGGATGAAACTGAAAAGAATTTTGGTGATGAGAAGCCTGTAGGTGAGGAATCTGCAGCAGATGGAAACAAGGACAGTCCTGCTAATGAAAATGAAGAGAAGGAGCCTGAGGAGAAGGAGATGACCCTGGAAGAGTATGAGAAAGTGCTGGAAGAGAGAAGGAAGGCCCTGCAGGCTCTCAAGACTGAAACAAGAAAGGTGGATATCAAGGAGTTTGCATCCATGCAGCCACTGTCAAACAAGAAAGACAATGATGAGATATTTATTAAACTGGGATCTGACAAGGATAAGCGTAAAGATGCTTTGGAGAAGGAGGAGAGATCCAAGAAGTCTGTGAACATCACTGAGTTTCTGAAGCCAGCTGAAGGGGAAAGGTACTACAACACGAGTGGGCGTGGTAGGGGACGTGGTCGTGGTGGTGGCCGAGGAGGAGGAGGAGGAGGATACAGTGGAAATGCAGGGAGCAATGTGTCAGCTCCATCAATTGAGGATCCTGGGCAATTCCCAACCTTGGGTGGCAAGTGA 1080 0.5213 MATANPFDLLGDDAEDPSQLIVTEQLKAAAAPKKEQSKPAQLPSKPIPPTQAAREAKNEASYGGRGGGRGGGRGYGRGGRGGGFGRDFSNDENSSVPVNQGSFEGEAGNTSERSGYGAPRGPYRGGGRGRRGGFSNGEVGEDGRPRRAFERHSGTGRGNDLKRDGAGRGNWGTQSDDIAQVTEEVGDETEKNFGDEKPVGEESAADGNKDSPANENEEKEPEEKEMTLEEYEKVLEERRKALQALKTETRKVDIKEFASMQPLSNKKDNDEIFIKLGSDKDKRKDALEKEERSKKSVNITEFLKPAEGERYYNTSGRGRGRGRGGGRGGGGGGYSGNAGSNVSAPSIEDPGQFPTLGGK* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0513 359 MobiDBLite consensus disorder prediction 88 109 - -
Pvu10g0513 359 Pfam Stm1 1 67 IPR019084 -
Pvu10g0513 359 SMART HABP4_PAI_RBP1_2 145 253 IPR006861 -
Pvu10g0513 359 Pfam Hyaluronan / mRNA binding family 145 252 IPR006861 -
Pvu10g0513 359 MobiDBLite consensus disorder prediction 268 298 - -
Pvu10g0513 359 PANTHER HYALURONIC ACID-BINDING PROTEIN 4 1 359 IPR039764 GO:0003723
Pvu10g0513 359 MobiDBLite consensus disorder prediction 184 204 - -
Pvu10g0513 359 Coils Coil 228 251 - -
Pvu10g0513 359 MobiDBLite consensus disorder prediction 211 227 - -
Pvu10g0513 359 MobiDBLite consensus disorder prediction 135 164 - -
Pvu10g0513 359 MobiDBLite consensus disorder prediction 244 359 - -
Pvu10g0513 359 Gene3D - 143 256 - -
Pvu10g0513 359 PANTHER NUCLEAR RNA-BINDING-LIKE PROTEIN 1 359 - -
Pvu10g0513 359 MobiDBLite consensus disorder prediction 26 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0513 Pvu-Chr10 7781808 7784979 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0513 K13199 - gmx:100805110 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0513 10 7781808 7784979 Pvu10g0513 10 7781808 7784979 ECH
Pvu10g0513 10 7781808 7784979 Pvu8g0480 8 4165203 4170250 PCT