Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02409 ATGGCCATGAAAAATGGCGAGGGGAGTGAAGTTGGGGCATTGCAGAGGGTGCTTTACATGTGGGGTTACCTTCCCGGAGCTCTGCCGCAGAGGACGCCGCTCTTGACGCCCGTCGCCGTTAGGGTTCCGCCGTGTGATTACTCTTGGAATGATGTTTGCGGCGGTGGCTGTGGATTTGCTATAGCTATATCTGAATCAGGGAAGCTCATCACATGGGGCTCAACAGATGATCTAGGCCAAAGCTATGTGACTTCTGGCAAGCATGGGGAAACTCCAGAGCCTTTCCCTCTTCCAACCGAAGCCTCTATTGTAAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAGAACATGGAGAAGTTTATACATGGGGATGGAAAGAATGTATTCCCTCTGGGAGGGTATTTGGTGAACCATCAACAGGGGTAAGTCTTGAAAAAGATGTGCCAGGAAGGCATAGTCCATTGTCCACAGAGCAAGTGAGCCCTCGTTCTCAAGGCTCAAGATCTACTGGAGGTACTGCCTCCAGTAACAGTGGAGAAGAAAGTACAAAGCGAAGGAGAGTGTCTTCAGCAAAGCAAACAGCTGAAAGCTCGTCATCCAGTGATGATAGTCTGACAGCATTTCCATGTCTTGTCACACTAAATCCAGGGATAAGGATAGCTAGTGTTGCTGCTGGTGGACGTCATACACTAGCATTGTCAGATACAGGACTGGTGTGGGCTTGGGGCTATGGAGGTGAAGGGCAGCTTGGTTTGGGTTCCAGAATACGTATGGTTTCCACTCCTCATCTTGTTCCTTGTATTGATTCCTCTTATTATGGTAAAGATAGATCTGCTACACTGGCTCGAGGAAACATGGGTTCAGAGGGACAGACTTTTAGAGTTCCTGGAAGTTACATTAAGAGAATTGCTTGTGGAGGTCGACATAGTGCAGTAATTACAGATGCTGGAGCCTTGCTTACTTTTGGTTGGGGACTCTATGGACAGTGTGGGCAAGGAACTACCGATGATGAACTAAGCCCAACTTGTGTATCATCCTTATTGGGTATCCACATAGAGGGAGTTGCCGCAGGACTGTGGCATACAGTCTGTACATCTGCTGATGGTGTTGTGTATGCATTTGGTGGGAATCAGTTTGGGCAGCTGGGAACTGGTGCTGATCAAGCTGAGACTCTACCAAGACTAGTGGATTCTCCGAGTTTGGAAAATTTGCATGCAAAGAATATATCTTGCGGTGCTCGCCACACTGCTTTAGTAACAGGTACCATCCTATAA 1281 0.4809 MAMKNGEGSEVGALQRVLYMWGYLPGALPQRTPLLTPVAVRVPPCDYSWNDVCGGGCGFAIAISESGKLITWGSTDDLGQSYVTSGKHGETPEPFPLPTEASIVKAAAGWAHCVAVTEHGEVYTWGWKECIPSGRVFGEPSTGVSLEKDVPGRHSPLSTEQVSPRSQGSRSTGGTASSNSGEESTKRRRVSSAKQTAESSSSSDDSLTAFPCLVTLNPGIRIASVAAGGRHTLALSDTGLVWAWGYGGEGQLGLGSRIRMVSTPHLVPCIDSSYYGKDRSATLARGNMGSEGQTFRVPGSYIKRIACGGRHSAVITDAGALLTFGWGLYGQCGQGTTDDELSPTCVSSLLGIHIEGVAAGLWHTVCTSADGVVYAFGGNQFGQLGTGADQAETLPRLVDSPSLENLHAKNISCGARHTALVTGTIL 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02409 426 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 225 235 IPR000408 -
Pumo9g02409 426 MobiDBLite consensus disorder prediction 156 181 - -
Pumo9g02409 426 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 371 424 IPR000408 -
Pumo9g02409 426 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 45 422 - -
Pumo9g02409 426 Pfam Regulator of chromosome condensation (RCC1) repeat 370 420 IPR000408 -
Pumo9g02409 426 Pfam Regulator of chromosome condensation (RCC1) repeat 319 366 IPR000408 -
Pumo9g02409 426 SUPERFAMILY RCC1/BLIP-II 30 422 IPR009091 -
Pumo9g02409 426 Pfam Regulator of chromosome condensation (RCC1) repeat 103 127 - -
Pumo9g02409 426 Pfam Regulator of chromosome condensation (RCC1) repeat 222 251 - -
Pumo9g02409 426 PRINTS Chromosome condensation regulator RCC1 signature 222 235 IPR000408 -
Pumo9g02409 426 PRINTS Chromosome condensation regulator RCC1 signature 241 257 IPR000408 -
Pumo9g02409 426 PRINTS Chromosome condensation regulator RCC1 signature 357 373 IPR000408 -
Pumo9g02409 426 PRINTS Chromosome condensation regulator RCC1 signature 373 387 IPR000408 -
Pumo9g02409 426 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 319 370 IPR000408 -
Pumo9g02409 426 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 67 119 IPR000408 -
Pumo9g02409 426 Gene3D - 10 172 IPR009091 -
Pumo9g02409 426 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 239 318 IPR000408 -
Pumo9g02409 426 MobiDBLite consensus disorder prediction 142 206 - -
Pumo9g02409 426 Gene3D - 274 425 IPR009091 -
Pumo9g02409 426 Gene3D - 192 273 IPR009091 -
Pumo9g02409 426 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 305 315 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02409 Pumo-Chr9 58196020 58202259 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02409 - - gmx:100807837 804.283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00187 1 2971725 2977512 Pumo9g02409 9 58196020 58202259 ECH
Pumo9g02409 9 58196020 58202259 Pumo9g02409 9 58196020 58202259 ECH
Pumo1g00187 1 2971725 2977512 Pumo9g02409 9 58196020 58202259 PCT