Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo1g00187 | ATGAATGGCGAGGGGAGTGAAGCAATGCAAGTGGAGAAGGAGAGGTTGGTGTACATGTGGGGTTACCTGCCCGGAGCTCTGCCGCAGAGGTCGCCGCTGTTGACGCCGATTCTTGTTAGGGTTCCGCCGTCTGGTTATGCTTGGAAGGATGTTTGCGGTGGTGGTTGTGGATTTGCCATGGCTATCTCTGAGCCTGGAAAGCTCATAACATGGGGTTCAACAGATGATTTAGGCCAAAGCTATGTTACATCTGGCAAACATGGGGAAACTCCAGAGCCTTTCCCTCTTCCAACTGAAGTGACTATTGTAAAAGCTGCAGCTGGATGGGCACATTGTGTTTCTGTGACGGATTGTGGAGAAGTTTACACATGGGGATGGAGGGAATGTGTTCCCTCCGGGAAGGTGTTTGGTGAATCATTAACTGGGGTAAACCCCGAAAAGGATGTACCGGGAAGGCAAAGTTCATACTTGATGGAGCAAGTGAGCCCTCGTTCTCAAGGCTCAAAATCTACTGGAGGAACTGCGTCTAGTACCAGTGGAGAAGAAAGTACAAAGAGAAGAAGAGTATCTTCAGCAAAGCAAACAGCTGAAACCTCGTCATCTAGTGATGATACTCAGACAGCATTGCCATGTCTTGTCACACTAAACCCAGGAGTGAGGATACAAAGTGTTGCTGCTGGTGGTCGCCACACCTTAGCATTGTCGGATATAGGACAGGTGTGGGGTTGGGGCTATGGAGGTGAAGGGCAGCTTGGTTTGGGTTCTAGAATACGAATGGTGTCCTCTCCTCATCTAGTTCCTTGTATTAATTCCTCTTCTTATGGTAAAGATATATCGGCGTCACTGGCTCGAGGAAGCATGAGTTCAGATGGGCAAAATTTCAGAGTTCCTGGAAGTTATATAAAGGGAATTGCCTGCGGAGGTCGACACAGTGCAGTAATCACAGATGCTGGAGCTGTGCTTACGTTTGGTTGGGGACTTTATGGACAGTGCGGGCAAGGAAGTACAGATGATGAACTGAGCCCGACTTGCGTATCTTCCTTATTGGGTATTCGAATAGAGGGAGTCGCTGCAGGACTGTGGCATACTGTGTGTACATCTGCTGATGGTGATGTATATGCATTTGGTGGAAACCAGTTTGGGCAGCTGGGAACTGGTGGTGATCAAGCTGAGACTATACCAAGGCTCCTGGATTGTCCGAGCTTGGAAAATGTGAATGTAAAGAGGATATCTTGTGGGGCTCGTCACACTGCTCTAATAACAGATAATGGAAAAGTCTTCTGCTGGGGATGGAACAAGTATGGACAGCTTGGCCTTGGGGACGTGATAGACCGTAACATTCCTTCTGAAGTTACCATCGAAGGTTGTGTAGCTAAAAACGTTGCATGTGGCTGGTGGCATACTCTTCTTCTGGCCGAGTCACCCACTTGA | 1431 | 0.485 | MNGEGSEAMQVEKERLVYMWGYLPGALPQRSPLLTPILVRVPPSGYAWKDVCGGGCGFAMAISEPGKLITWGSTDDLGQSYVTSGKHGETPEPFPLPTEVTIVKAAAGWAHCVSVTDCGEVYTWGWRECVPSGKVFGESLTGVNPEKDVPGRQSSYLMEQVSPRSQGSKSTGGTASSTSGEESTKRRRVSSAKQTAETSSSSDDTQTALPCLVTLNPGVRIQSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHLVPCINSSSYGKDISASLARGSMSSDGQNFRVPGSYIKGIACGGRHSAVITDAGAVLTFGWGLYGQCGQGSTDDELSPTCVSSLLGIRIEGVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGGDQAETIPRLLDCPSLENVNVKRISCGARHTALITDNGKVFCWGWNKYGQLGLGDVIDRNIPSEVTIEGCVAKNVACGWWHTLLLAESPT | 476 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo1g00187 | 476 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 221 | 250 | - | - | |
| Pumo1g00187 | 476 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 410 | 420 | IPR000408 | - | |
| Pumo1g00187 | 476 | Gene3D | - | 8 | 139 | IPR009091 | - | |
| Pumo1g00187 | 476 | Gene3D | - | 284 | 475 | IPR009091 | - | |
| Pumo1g00187 | 476 | MobiDBLite | consensus disorder prediction | 158 | 206 | - | - | |
| Pumo1g00187 | 476 | Gene3D | - | 197 | 283 | IPR009091 | - | |
| Pumo1g00187 | 476 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 66 | 118 | IPR000408 | - | |
| Pumo1g00187 | 476 | MobiDBLite | consensus disorder prediction | 158 | 180 | - | - | |
| Pumo1g00187 | 476 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 13 | 472 | - | - | |
| Pumo1g00187 | 476 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 318 | 369 | IPR000408 | - | |
| Pumo1g00187 | 476 | PRINTS | Chromosome condensation regulator RCC1 signature | 102 | 115 | IPR000408 | - | |
| Pumo1g00187 | 476 | PRINTS | Chromosome condensation regulator RCC1 signature | 224 | 240 | IPR000408 | - | |
| Pumo1g00187 | 476 | PRINTS | Chromosome condensation regulator RCC1 signature | 359 | 377 | IPR000408 | - | |
| Pumo1g00187 | 476 | PRINTS | Chromosome condensation regulator RCC1 signature | 419 | 440 | IPR000408 | - | |
| Pumo1g00187 | 476 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 224 | 234 | IPR000408 | - | |
| Pumo1g00187 | 476 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 424 | 474 | IPR000408 | - | |
| Pumo1g00187 | 476 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 423 | 471 | IPR000408 | - | |
| Pumo1g00187 | 476 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 318 | 365 | IPR000408 | - | |
| Pumo1g00187 | 476 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 369 | 420 | IPR000408 | - | |
| Pumo1g00187 | 476 | SUPERFAMILY | RCC1/BLIP-II | 203 | 474 | IPR009091 | - | |
| Pumo1g00187 | 476 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 370 | 423 | IPR000408 | - | |
| Pumo1g00187 | 476 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 304 | 314 | IPR000408 | - | |
| Pumo1g00187 | 476 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 238 | 317 | IPR000408 | - | |
| Pumo1g00187 | 476 | SUPERFAMILY | RCC1/BLIP-II | 17 | 266 | IPR009091 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo1g00187 | Pumo-Chr1 | 2971725 | 2977512 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo1g00187 | - | - | gmx:100778841 | 909.442 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pumo1g00187 | 1 | 2971725 | 2977512 | Pumo1g00187 | 1 | 2971725 | 2977512 | ECH | |
| Pumo1g00187 | 1 | 2971725 | 2977512 | Pumo9g02409 | 9 | 58196020 | 58202259 | ECH | |
| Pumo1g00187 | 1 | 2971725 | 2977512 | Pumo9g02409 | 9 | 58196020 | 58202259 | PCT |