Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02352 ATGGAGGATCGGGACGCGAAGCGGATGACGACGAGGTTGTCGGATGTGGTGCTGGACTGCGTGATGCCGTACATCCACGACCCCAAGGACCGCGACGCCGTGTCCCAGGTGTGCCGGCGGTGGTACGAGCTCGACTCGCTCACGCGGAAGCACGTCACGATTGCGCTCTGCTACACCACCACGCCGGACCGGCTCCGGCGGCGGTTCCCGCACCTCGAGTCGCTGAAGCTGAAGGGGAAGCCGCGCGCGGCCATGTTCAACTTGATACCGGAGGATTGGGGAGGTTTCGTCACGCCCTGGGTTAGAGAGATCTCTCAGTACTTCGATTGCTTGAAGTCGCTTCACTTTCGGCGCATGATTGTGAGGGATACCGATCTTCAGGTTCTGGCTCGTTCGCGCGGTCACATACTTCAGGCGCTTAAGCTAGAAAAGTGCTCTGGATTCTCCACCGATGGCCTCTACTATATCGGTCGTTATTGCAGGAATTTAAGAATCTTGTTTTTAGAGGAAACCAACAACCTTGTTGAGAATGATGGTGACTGGCTCCATGAGCTTGCTTTGAATAATACAGTTCTTGAGACACTGAATTTTTACGTGACTGATATTGCCAATGTCAGAATCCAGGACCTTGAACTTATAGCCAAAAATTGCCCCAACTTAAACTCTGTGAAAATTACTGATTGTGAAGTATTAGATCTGGTGAACTTTTTTCGATATGCATCTGCTCTAGAAGAATTTTGTGGCGGTTCCTACAATGAGGACTCGGAGAAGTACTCTGCTATATCATTGCCAGCAAAATTAAGTCGTTTGGGTTTGACATATATTACAAAGAATGAAATGCCCATAGTGTTCCCTTATGCAGCCTCACTGAAAAAATTGGATCTTCTCTATGCAATGCTGGATACAGAGGACCATTGTACGTTAATCCAAAGGTGCCCCAACTTGGAAGTTCTTGAGTCAAGGAATGTAATTGGAGACAGAGGATTAGAAGTGCTGGCTCGCTGTTGTAGGAGGCTTAAAAGGCTTCGGATTGAACGAGGTGATGATGATCAAGGAATGGAGGATGAAGAAGGTGTTGTTTCCCAGAGAGGACTAATTGCTTTGGCACATGGCTGTCCAGAACTTGAATACTTGGCCGTTTATGTATCCGACATCACAAATGCATCTCTAGAACACATTGGTACTCACTTGAAAAACCTTTGTGATTTTCGCCTGGTCTTGCTAGACCGCGAAGAGAAAATAACTGATTTGCCACTTGACAACGGAGTGAGGGCATTACTGAGGGGTTGTGACAAGCTCAGAAGATTTGCTCTGTATCTGAGACCTGGGGGATTGACTGATGTAGGGCTCGGTTACATAGGGCAATACAGCCCCAACGTGAGATGGATGCTTCTTGGTTATGTGGGAGAGACTGATGCAGGGCTTTTGGAATTCTCTAAGGGCTGCCCCAGTCTTCAGAAACTTGAAATGAGAGGATGCTCCTTTTTCAGTGAGTATGCACTAGCTGTTGCTGCAACTCAACTGAATTCTCTCAGGTATCTATGGGTGCAAGGGTATGGAGCATCTCCATCTGGACGTGATCTTCTGGCAATGGCTCGCCCCTATTGGAACATTGAGTTGATTCCTTCTAGACGCGTGGTTGTTCACAATCATCAAGAAGAGCCTGTAGTTGTTGAGCACCCGCTCATATTCTTGCATATTACTCCCTTGCTGGCCCAAGAACAGATTTTCCAGATACTGTTATACCTTTGGATCCTGCAACATATGTTGACACCTAAACTTGTACATACCATTTTTTTTATCTTCTTTCCAACTTTTTTTTTCCCTTTCAAATCTTGTTTGTAA 1845 0.4688 MEDRDAKRMTTRLSDVVLDCVMPYIHDPKDRDAVSQVCRRWYELDSLTRKHVTIALCYTTTPDRLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGFVTPWVREISQYFDCLKSLHFRRMIVRDTDLQVLARSRGHILQALKLEKCSGFSTDGLYYIGRYCRNLRILFLEETNNLVENDGDWLHELALNNTVLETLNFYVTDIANVRIQDLELIAKNCPNLNSVKITDCEVLDLVNFFRYASALEEFCGGSYNEDSEKYSAISLPAKLSRLGLTYITKNEMPIVFPYAASLKKLDLLYAMLDTEDHCTLIQRCPNLEVLESRNVIGDRGLEVLARCCRRLKRLRIERGDDDQGMEDEEGVVSQRGLIALAHGCPELEYLAVYVSDITNASLEHIGTHLKNLCDFRLVLLDREEKITDLPLDNGVRALLRGCDKLRRFALYLRPGGLTDVGLGYIGQYSPNVRWMLLGYVGETDAGLLEFSKGCPSLQKLEMRGCSFFSEYALAVAATQLNSLRYLWVQGYGASPSGRDLLAMARPYWNIELIPSRRVVVHNHQEEPVVVEHPLIFLHITPLLAQEQIFQILLYLWILQHMLTPKLVHTIFFIFFPTFFFPFKSCL 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02352 614 FunFam Coronatine-insensitive protein 1 50 570 - -
Pumo9g02352 614 FunFam F-box/LRR-repeat protein 4 10 49 - -
Pumo9g02352 614 Pfam F-box 11 51 IPR041567 -
Pumo9g02352 614 Gene3D Ribonuclease Inhibitor 50 582 IPR032675 -
Pumo9g02352 614 SMART LRR_CC_2 372 396 IPR006553 -
Pumo9g02352 614 SMART LRR_CC_2 482 506 IPR006553 -
Pumo9g02352 614 SMART LRR_CC_2 217 236 IPR006553 -
Pumo9g02352 614 SMART LRR_CC_2 134 159 IPR006553 -
Pumo9g02352 614 SMART LRR_CC_2 312 335 IPR006553 -
Pumo9g02352 614 SMART LRR_CC_2 430 456 IPR006553 -
Pumo9g02352 614 CDD F-box_AtTIR1-like 12 49 - -
Pumo9g02352 614 SUPERFAMILY F-box domain 7 50 IPR036047 GO:0005515
Pumo9g02352 614 SUPERFAMILY RNI-like 88 402 - -
Pumo9g02352 614 Gene3D - 1 49 - -
Pumo9g02352 614 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 16 244 - -
Pumo9g02352 614 Pfam Transport inhibitor response 1 protein domain 70 116 IPR041101 -
Pumo9g02352 614 SUPERFAMILY RNI-like 365 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02352 Pumo-Chr9 56933634 56939063 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02352 K13463 - gmx:100793081 1084.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02352 9 56933634 56939063 Pumo9g02352 9 56933634 56939063 ECH
Pumo1g00229 1 3515468 3519315 Pumo9g02352 9 56933634 56939063 PCT