Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00229 ATGACGGAGGACCGGAACGTGCGGAAGACACGTGTGGTCGACGTGGTCCTCGACTGCGTCATCCCATACATCGAGGACCCCAAGGACCGCGACGCCGTCTCCCAGGTGTGCCGACGCTGGTACGAGCTCGACTCCCTCACCAGGAAGCACGTCACCATCGCCCTCTGCTACACCACAACGCCTGCGCGCCTCCGCCGCCGCTTCCCCCACCTCGAGTCCCTCAAGCTCAAGGGCAAGCCCCGAGCTGCAATGTTCAACCTCATACCCGAGGATTGGGGTGGCCACGTCACTCCCTGGGTTGGGGAAATCTCTCAGTACTTCGATTGCCTCAAGAGCCTCCACTTCCGCCGCATGATTGTCAAGGATTCCGATCTTCAGATTCTCGCTCGCGACCGCGGTCACGTGCTCCACGCTCTCAAGCTTGACAAGTGCTCCGGTTTCTCCACCGATGGTCTTTTCCATATCGGTCGCTTTTGCAAGAATTTAAGAGTCTTGTTTTTGGAGGAAAGCTCAATTGTTGAGAAGGACGGAGAATGGCTACATGAGCTCGCTTTGAATAATACAGTTCTTGAGACTCTCAACTTTTACTTGACAGATATTGCTGTTGTCAAGATTCAGGACCTTGAACTTTTAGCTAAAAATTGCCCCAACTTAGTGTCTGTGAAACTTACTGATTGTGAAATACTGGATCTTGTGAACTTCTTTAAGCATGCCTCTGCTCTGGAAGAGTTTTGTGGAGGCACCTACAATGAGGAACCAGAAAAATACTCTGCTATATCATTACCAGCAAAGTTATGTCGTTTAGGTTTAACATATATTGGAAAGAATGAGTTGCCCATAGTGTTCATGTTTGCAGCCGTACTAAAAAAATTGGATCTCCTCTATGCAATGCTAGACACGGAGGATCATTGTATGTTAATCCAAAGGTGTCCAAATCTGGAAGTCCTTGAGACAAGGAATGTAATTGGAGATAGAGGGTTAGAGGTTCTTGGTCGTTGTTGTAGGAGGCTAAAAAGGCTTAGGATTGAAAGGGGCGATGATGATCAAGGAATGGAGGATGAAGAAGGTACTGTGTCCCATAGAGGGCTAATAGCTTTGTCACAGGGCTGTTCGGAGCTTGAATACATGGCTGTTTATGTTTCTGATATTACAAATGCATCTCTGGAACATATTGGAACTCACTTGAAGAACCTCTGCGATTTTCGCCTTGTGTTGCTTGACCATGAAGAGAAAATAACTGATTTGCCACTTGACAATGGGGTGAGGGCTCTACTGAGGGGCTGTGACAAGCTGAGAAGATTTGCTCTATATCTCAGGCGTGGGGGGTTGACTGATGTAGGTCTTGGTTACATTGGACGGTACAGTCCAAATGTGAGATGGATGCTGCTTGGTTATGTGGGGGAGTCTGATGCAGGGCTTTTGGAGTTCTCTAAGGGGTGTCCTAGTCTTCAGAAACTTGAAATGAGAGGGTGTTCTTTTTTCAGTGAACGTGCACTTGCTGTGGCTGCAACACAATTGACTTCTCTTAGGTACTTGTGGGTGCAAGGGTATGGTGTATCTCCATCTGGACGTGATCTTTTGGCAATGGCTCGCCCCTTTTGGAACATTGAGTTGATTCCTTCTAGAAAGGTGGCTATGAATACCACCAATCCGGATGAGACTGTTGAGCATCCTGCTCATATTCTTGCATATTATTCTCTTGCAGGGCAGAGATCAGATTTTCCAGATACTGTTGTGCCTTTGGACACTGCCACATGCGTTGACGCCTAG 1770 0.4785 MTEDRNVRKTRVVDVVLDCVIPYIEDPKDRDAVSQVCRRWYELDSLTRKHVTIALCYTTTPARLRRRFPHLESLKLKGKPRAAMFNLIPEDWGGHVTPWVGEISQYFDCLKSLHFRRMIVKDSDLQILARDRGHVLHALKLDKCSGFSTDGLFHIGRFCKNLRVLFLEESSIVEKDGEWLHELALNNTVLETLNFYLTDIAVVKIQDLELLAKNCPNLVSVKLTDCEILDLVNFFKHASALEEFCGGTYNEEPEKYSAISLPAKLCRLGLTYIGKNELPIVFMFAAVLKKLDLLYAMLDTEDHCMLIQRCPNLEVLETRNVIGDRGLEVLGRCCRRLKRLRIERGDDDQGMEDEEGTVSHRGLIALSQGCSELEYMAVYVSDITNASLEHIGTHLKNLCDFRLVLLDHEEKITDLPLDNGVRALLRGCDKLRRFALYLRRGGLTDVGLGYIGRYSPNVRWMLLGYVGESDAGLLEFSKGCPSLQKLEMRGCSFFSERALAVAATQLTSLRYLWVQGYGVSPSGRDLLAMARPFWNIELIPSRKVAMNTTNPDETVEHPAHILAYYSLAGQRSDFPDTVVPLDTATCVDA 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00229 589 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 28 244 - -
Pumo1g00229 589 Gene3D - 2 48 - -
Pumo1g00229 589 FunFam Coronatine-insensitive protein 1 49 584 - -
Pumo1g00229 589 Gene3D Ribonuclease Inhibitor 49 585 IPR032675 -
Pumo1g00229 589 SUPERFAMILY RNI-like 109 524 - -
Pumo1g00229 589 CDD F-box_AtTIR1-like 14 48 - -
Pumo1g00229 589 Pfam Transport inhibitor response 1 protein domain 69 115 IPR041101 -
Pumo1g00229 589 Pfam F-box 10 50 IPR041567 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00229 Pumo-Chr1 3515468 3519315 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00229 K13463 - gmx:100779171 1137.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00229 1 3515468 3519315 Pumo1g00229 1 3515468 3519315 ECH
Pumo1g00229 1 3515468 3519315 Pumo9g02352 9 56933634 56939063 PCT