Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g02133 ATGGACCTCCATCGCCGGCCGCCGGCCACCGCTGACGACGGAGCCATCCACCACCCCAAGAAGAGGGACTCCACTTCCTCCTCATCACCTTCACCTTCCACTCCAAAGGCCTCCGACGCACTCCCTCTCCCTCTCTACCTCACCAATGCGATTTTCTTCACGCTCTTCTTCTCCGTCGCGTATTTCCTCCTCCACCGCTGGCGCGACAAGATCCGCAGCCACACCCCTCTCCACGTCGTCACCCTCTCCGAGATCGCTGCAATTTTCTCTCTCATCGCGTCGTTTATTTACCTCCTCGGCTTCTTCGGCATCGACTTCGTCCAGTCCTTCATCTCACGCGCCTCCCACGACGTCTGGGACCTGGACGACGCCGTAACGGATCCCTCTCCCTCGCAGTCACCTTCAATTCCCAAATTGCCCTCTCCGGATACATCAATTATTTCCTCCGAGGATGACCAGGAGATCGTGAACTCCGTCGTGGAGGGCGTCACGCCCTCCTACGCGCTCGAGTCCCGTCTCGGCGACTGTCGCCGTGCCGCGGCGATACGGCGCGGCGCGCTGCAGCGCCTGACGGGGCGGTCGCTGGAGGGGCTGCCGCTGGAGGGGTTCGATTATGATTCCATTTTGGGGCAGTGCTGCGAAATGCCGGTGGGGTATGTTCAGATTCCGGTGGGGGTGGCGGGGCCGTTGTTGTTGGATGGGTTTGAATACACGGTGCCGATGGCCACCACGGAGGGGTGCCTTGTGGCCAGCACCAACAGAGGGTGCAAGGCCATTTATGCTTCTGGTGGGGCCAGCAGTGTCGTTTTGAGGGATTGCATGTCACGGGCACCTGTTGTTAGGTTCTCCACTGCTAAGAGGGCTGCACAGTTGAAGTTCTTCCTTGAGGATCCTCTCAATTTTGATACCTTAGCACTTGTTTTCAACAGGTCGAGTAGATTTGCCAGGCTTCAAGGTATTCAGTGTGCTATGGCTGGGAAGAATGTTTATTTGAGATTCACTTGTAGCACGGGTGATGCCATGGGGATGAACATGGTTTCCAAAGGGGTGCAAAACGTTCTTGATTTTCTTCAGAATGATTTCCCTGACATGGATGTTATTGGCATTTCTGGAAATTATTGCTCGGACAAGAAACCTGCTGCAGTAAATTGGATCGAGGGACGTGGGAAATCAGTTGTTTGTGAAGCAATTATCAAAGAAGAAGTGGTGAAGAAGGTATTGAAGACCAATGTGTCTGCCCTGGTGGAGCTTAACATGCTCAAAAACCTTGCTGGTTCAGCTGTTGCCGGTGCTCTTGGTGGATTCAATGCCCATGCTAGTAACATTGTTTCTGCCGTCTTTATAGCCACTGGTCAAGATCCAGCTCAAAATGTTGAGAGTTCCCATTGCATAACCATGATGGAAGCCGTCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCTTCCATTGAGGTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAGTCTGCTTGCTTGAATTTGCTTGGTGTGAAGGGTGCGAGCAAGGAGTCACCAGGATCAAACTCAAGACTGTTGGCCACCATTGTTGCTGGATCTGTTTTAGCAGGAGAGCTGTCTCTGATGTCTGCCATTGCAGCAGGGCAGCTAGTCAACAGCCACATGAAATACAACAGATCAAGCAAAGATGTAACCAAAATATCATCTTGA 1701 0.532 MDLHRRPPATADDGAIHHPKKRDSTSSSSPSPSTPKASDALPLPLYLTNAIFFTLFFSVAYFLLHRWRDKIRSHTPLHVVTLSEIAAIFSLIASFIYLLGFFGIDFVQSFISRASHDVWDLDDAVTDPSPSQSPSIPKLPSPDTSIISSEDDQEIVNSVVEGVTPSYALESRLGDCRRAAAIRRGALQRLTGRSLEGLPLEGFDYDSILGQCCEMPVGYVQIPVGVAGPLLLDGFEYTVPMATTEGCLVASTNRGCKAIYASGGASSVVLRDCMSRAPVVRFSTAKRAAQLKFFLEDPLNFDTLALVFNRSSRFARLQGIQCAMAGKNVYLRFTCSTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNYCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKKVLKTNVSALVELNMLKNLAGSAVAGALGGFNAHASNIVSAVFIATGQDPAQNVESSHCITMMEAVNDGRDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGSNSRLLATIVAGSVLAGELSLMSAIAAGQLVNSHMKYNRSSKDVTKISS 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g02133 566 Gene3D - 142 222 IPR023282 GO:0004420
Pumo9g02133 566 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 274 389 IPR009023 -
Pumo9g02133 566 Gene3D - 223 551 IPR023074 GO:0004420
Pumo9g02133 566 Pfam Hydroxymethylglutaryl-coenzyme A reductase 180 556 IPR002202 GO:0004420|GO:0015936
Pumo9g02133 566 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 378 551 - -
Pumo9g02133 566 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 541 554 IPR023076 GO:0004420
Pumo9g02133 566 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 148 222 - -
Pumo9g02133 566 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 31 560 IPR002202 GO:0004420|GO:0015936
Pumo9g02133 566 MobiDBLite consensus disorder prediction 1 24 - -
Pumo9g02133 566 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 332 346 IPR023076 GO:0004420
Pumo9g02133 566 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 212 233 IPR002202 GO:0004420|GO:0015936
Pumo9g02133 566 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 330 348 IPR002202 GO:0004420|GO:0015936
Pumo9g02133 566 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 370 395 IPR002202 GO:0004420|GO:0015936
Pumo9g02133 566 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 475 496 IPR002202 GO:0004420|GO:0015936
Pumo9g02133 566 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 239 259 IPR002202 GO:0004420|GO:0015936
Pumo9g02133 566 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 421 447 IPR002202 GO:0004420|GO:0015936
Pumo9g02133 566 MobiDBLite consensus disorder prediction 1 38 - -
Pumo9g02133 566 Gene3D - 273 389 IPR009023 -
Pumo9g02133 566 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 152 556 IPR002202 GO:0004420|GO:0015936
Pumo9g02133 566 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 147 545 IPR009029 GO:0015936|GO:0016616
Pumo9g02133 566 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 152 556 IPR004554 GO:0004420|GO:0005515|GO:0008299
Pumo9g02133 566 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 273 389 - -
Pumo9g02133 566 CDD HMG-CoA_reductase_classI 154 556 IPR004554 GO:0004420|GO:0005515|GO:0008299
Pumo9g02133 566 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 487 494 IPR023076 GO:0004420
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g02133 Pumo-Chr9 52564821 52568700 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g02133 1 562 Lipid Metabolism Gene Families AT1G76490 75.427 0.0 902
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g02133 K00021 - gmx:100784330 1016.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02133 9 52564821 52568700 Pumo8g01612 8 51441657 51446111 ECH
Pumo9g02133 9 52564821 52568700 Pumo9g02133 9 52564821 52568700 ECH