Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g01612 ATGGAAGTTCGCCGGCGAGCCCTCCGTTCCGCTCCCGCCGGCGAACCTTTGAAGCCCAAACCCGACCCACAATCCCTGCAGCCACCACAACAATCGTATCTCACCAACGGCGTGTTCTTCGGGCTGTTCTTCTCGGTGGCGTACTTCCTCCTCCACCGATGGCGCGAGAAGATCCGCACCTCCACTCCCCTCCACGTCGTCACGCTCTCCGAGATGGCCGCCATCGTCTCCCTCATCGCCTCCGTCGTCTACCTCATGGCCTTCTTCGGCATTACCTTCATCCTCCACCCCTTCCTCAATTCCCGCTCTTCCCCCGACGACGACCTCGACCTCGACCTTCCCAAACCTGTTGTCGACGTCGTCACTCCCTGCCCCGCCGCCCTCTCATCCAAACTCCCTCCCTCTCCCCTCCCCCATGACGACGAGGACATCGTCTTCGCCGTCGTGTCCGGCTCCATCCCCTCATATTCGCTCGAGTCACGGCTGGGCGACTGCCATCGCGCAGCCGTGATTCGGCGTGAGGCGGTGGAGCGCGTCACCGGGAGGTCTCTGCAAGGCCTCCCGGTGGAAGGCTTCGATTATGATTCCATTCTAGGGCAGTGCTGTGAGATGCCGATCGGGTTCGTGCAGATCCCCGTCGGCGTCGCGGGGCCCTTGCTCCTCGACGGGAAGGAGTACACCGTTCCGATGGCCACCACGGAGGGTTGCTTGGTCGCTAGCACCAACAGAGGCTGCAAGGCCATTCACGTCTCCGGCGGAGCTTCCTCCATGCTCCTCCGTGACGCCATGACCAGAGCCCCCGTTGTTCGGTTCAGCTCCGCCAAACGTGCTTCCCAGCTTAAGTTCTACCTGGAAGACCCCCTCAATTTCGATTCCTTTGCCATCGTTTTCAACAAGTCAAGCAGGTTTGCTAGATTGCAAGATATAAAGGCTGCAGTAGCAGGAAAGAATCTGTATATTAGATTCAGTTGCACTACCGGGGATGCCATGGGAATGAACATGGTTTCAAAAGGAGTTCAAAACGTGCTCTCTTTTCTTCAGAGTGATTTTCCTGATATGGATGTTATTGGGATATCTGGGAATTTCTGTTCGGATAAGAAGGCTGCAGCGGTGAACTGGATTGAGGGGAGAGGGAAGTCGGTGGTGTGCGAGGCTGTGATTAAGGAGGAGGTGGTTAAGAAAGTGTTGAAGACTAGCGTGGAGGCTTTGGTTGAGCTTAACATGTTGAAAAACCTTACTGGGTCTGCCATGGCTGGTGCTCTTGGTGGCTTCAATGCTCATGCCAGTAATATTGTTTCTGCTGTTTACTTGGCCACTGGACAGGATCCTGCTCAGAATGTGGAGAGTTCTCATTGCATAACTATGATGGAGGCTGTGAATGATGGCAAGGACCTTCACATCTCTGTTACTATGCCTTCCGTTGAGGTGGGTACAGTTGGAGGGGGCACACAACTGGCGTCTCAGTCAGCATGCCTCAATTTACTGGGTGTTAAGGGTGCGAGCAAAGAGTCCCCAGGTGCAAATTCTAGGTTACTAGCAACCATAGTAGCAGGTTCAGTCCTCGCAGGGGAACTCTCTCTCATGTCTGCAATTGCAGCAGGGCAACTTGTTAATAGCCACATGAAATACAACAGGTCTAGCAAGGATATCACTAAAATTGGCACCTAA 1668 0.5474 MEVRRRALRSAPAGEPLKPKPDPQSLQPPQQSYLTNGVFFGLFFSVAYFLLHRWREKIRTSTPLHVVTLSEMAAIVSLIASVVYLMAFFGITFILHPFLNSRSSPDDDLDLDLPKPVVDVVTPCPAALSSKLPPSPLPHDDEDIVFAVVSGSIPSYSLESRLGDCHRAAVIRREAVERVTGRSLQGLPVEGFDYDSILGQCCEMPIGFVQIPVGVAGPLLLDGKEYTVPMATTEGCLVASTNRGCKAIHVSGGASSMLLRDAMTRAPVVRFSSAKRASQLKFYLEDPLNFDSFAIVFNKSSRFARLQDIKAAVAGKNLYIRFSCTTGDAMGMNMVSKGVQNVLSFLQSDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAVIKEEVVKKVLKTSVEALVELNMLKNLTGSAMAGALGGFNAHASNIVSAVYLATGQDPAQNVESSHCITMMEAVNDGKDLHISVTMPSVEVGTVGGGTQLASQSACLNLLGVKGASKESPGANSRLLATIVAGSVLAGELSLMSAIAAGQLVNSHMKYNRSSKDITKIGT 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g01612 555 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 141 545 IPR004554 GO:0004420|GO:0005515|GO:0008299
Pumo8g01612 555 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 321 335 IPR023076 GO:0004420
Pumo8g01612 555 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 137 534 IPR009029 GO:0015936|GO:0016616
Pumo8g01612 555 Pfam Hydroxymethylglutaryl-coenzyme A reductase 170 545 IPR002202 GO:0004420|GO:0015936
Pumo8g01612 555 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 530 543 IPR023076 GO:0004420
Pumo8g01612 555 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 141 545 IPR002202 GO:0004420|GO:0015936
Pumo8g01612 555 Gene3D - 138 211 IPR023282 GO:0004420
Pumo8g01612 555 CDD HMG-CoA_reductase_classI 142 545 IPR004554 GO:0004420|GO:0005515|GO:0008299
Pumo8g01612 555 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 364 540 - -
Pumo8g01612 555 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 27 549 IPR002202 GO:0004420|GO:0015936
Pumo8g01612 555 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 137 211 - -
Pumo8g01612 555 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 262 378 - -
Pumo8g01612 555 Gene3D - 262 378 IPR009023 -
Pumo8g01612 555 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 410 436 IPR002202 GO:0004420|GO:0015936
Pumo8g01612 555 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 359 384 IPR002202 GO:0004420|GO:0015936
Pumo8g01612 555 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 201 222 IPR002202 GO:0004420|GO:0015936
Pumo8g01612 555 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 464 485 IPR002202 GO:0004420|GO:0015936
Pumo8g01612 555 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 319 337 IPR002202 GO:0004420|GO:0015936
Pumo8g01612 555 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 228 248 IPR002202 GO:0004420|GO:0015936
Pumo8g01612 555 MobiDBLite consensus disorder prediction 1 28 - -
Pumo8g01612 555 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 476 483 IPR023076 GO:0004420
Pumo8g01612 555 Gene3D - 212 540 IPR023074 GO:0004420
Pumo8g01612 555 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 263 378 IPR009023 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo8g01612 Pumo-Chr8 51441657 51446111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo8g01612 4 551 Lipid Metabolism Gene Families AT1G76490 72.760 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g01612 K00021 - gmx:100790033 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g02133 9 52564821 52568700 Pumo8g01612 8 51441657 51446111 ECH
Pumo8g01612 8 51441657 51446111 Pumo8g01612 8 51441657 51446111 ECH