Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01880 ATGGAGGAGCAGACTTTTGTGTCGAAAGCGAGGACCGCCTTCCATTCCGCGGCGGCGAAAGCGGAGCGCGTTCTCTTGGATTTCAAGTCCGATCGAGCATTGACTCAATTTGTTGACCGTGAAGAAGATCACGATAAGCAATCGTCGCCCAACACCTTCACCGGGCAACAACCACAAGCTGAATCTCCTCACAACAACGAAAACGGGTCCAAGCTTCGTAGTGAATTGAAGCATATAAAGTGGAGACCTCCACATTTAGGAATAAAGCAGGATTGGCAAGATAGGATAAAGAACATCCGGAGAGGGAGAAAAGAAGTTGAAGATACAGATAAAGTTGGGGATGCAAGCATGGCAATTCCATTTTATGACGATAATTTGTACCTCCTGAATGTGAAGAATGATCTTGAGGCCAAGGCTTCAGAAGCAATTCCCTCAGTTGAAGGCCTAACTGCTGCAACTAAAGATCCCATTCCTTCATCATCTGTGCTGAAGCAATTGGCTATAGCTGTTGAGGCTGGAAGTAAAGCAAAGTCAATGAAAGATTTTATAGCTTCATCAGGAGGTTCTTCACCTGCTAAAGAGAGGGCAGGCTTAAGTCTCTCGGCAGTTAAGGCTTTAGTGCTACGTGAAAAGGAGGACAAACTTACCTCTGAGTTTACTAGCAATGAGAAAGTTGTGCAGTTAATTAATTCTCTGTTTGATCCAGAAGGAGATTTCCTTAGAAGAAAGATCAACTCTAATCTAGAGGAAAATGCTATGACATCTTTCCCAAGAGATATTCATGGTGCTCCTCCTGAAAGCCTTGTTGTTAAGCTAGCTGAAATCCTTGGAAACTACAAGACTCTTCGAAAAATGGCTCTTTTCTGGTGCAGGGTTGTTGCTGAACTAAGAAAACTTTGGTCTGAGGAACAACACTTACCAGGAGTCCCCCAGAATGAGATTCCTGATCTGAAGTCATGTCTTCTATATCAACAATTTCAAGTAATTAATTGCTGCATCTCTCGGAAAAGGTTCCGTATTATTGCCACGGAATCTTTAGACTCTATGATGATGCAAGCTAATTCAGACATAAAAGAATCAACTGACTGTAGCACTGGTGCTCCTGCAAGCCCTGTTCTATATGCTAGATTGAATAGTGGGGAGCTTGTTCTTCGACTTGGTGCAGATCGTCCTGCTGGAGATATGACATTGTTGGAAACTGGCGAGCCTGTGTATTCTCCAATCACTCAGGAAGGACCTTTGCTTACAGAAGATCTAATCAGGGAAACAGAGGAGTTTGTGCTGCGGACAGGGAGTGTTGGTGCTGGGTGCTCTCAACTGCTCTCAGATATGCAGGCTTTCAAGGCTGCAAATCCTGGATGTATTTTGGAGGATTTTGTAAGATGGCACTCTCCTCCTGATTGGACAGATAATGAAGCAAGTACAGAGGATAGTGATGTTTTTGATAGTGGTGAGTCATTGTCTGCCAGAGGTCAGCTAAGTCGGAGAATGCAAAAAGAAGGTAATTTATGGCGTGAATTGTGGGAAACATCTAAACCAGTACCTGCTGTTAAGCAGGCACCTCTGTTTGATGAGGATTTGGCAGTGGAGGGCATCCTCAATGCATTTGAGGACATCCATCCTTCTGATCTTTTTGGACAGCTGTTTGTTTCTTTACTTGGTTTGGGATTTGCAATTGCCGAACCTATGCTGTCTAGTAACAGTGACTTCTCGAAGTTATTCTATGACTGCAAGGAGTACATAATTGCTGCTTGTCAAAGCAACAAATTGAATGAGAAAGTTGATGATCTTGTCCAGGTATATGAAACAGTGGAGAAAATGTTATTGAATCCTGAAGAAGCACTAAAGATGATTAAGCAGACAGAGGAATCAACAATGGTTACTGATGAACCAAGGAGCCCGTTTAAGAGACTTAGCCTCATCTTTGGTGGCAAAGATAAACTATTGAGGAAGTCTGTCTCAAAAGATCAGACAAATGATGAAGAAAAATCAAGTCGGCAATCATTCTCAAGTTTCTTTGACAGCAAGTCACCTTTGTTTGGAAAGAAGCCTCCCAAGTCTGGATCCCCATCTTCTGAGAAATCTTCTCTCGATACTGGTTGGACAGTTGTTTAG 2115 0.4293 MEEQTFVSKARTAFHSAAAKAERVLLDFKSDRALTQFVDREEDHDKQSSPNTFTGQQPQAESPHNNENGSKLRSELKHIKWRPPHLGIKQDWQDRIKNIRRGRKEVEDTDKVGDASMAIPFYDDNLYLLNVKNDLEAKASEAIPSVEGLTAATKDPIPSSSVLKQLAIAVEAGSKAKSMKDFIASSGGSSPAKERAGLSLSAVKALVLREKEDKLTSEFTSNEKVVQLINSLFDPEGDFLRRKINSNLEENAMTSFPRDIHGAPPESLVVKLAEILGNYKTLRKMALFWCRVVAELRKLWSEEQHLPGVPQNEIPDLKSCLLYQQFQVINCCISRKRFRIIATESLDSMMMQANSDIKESTDCSTGAPASPVLYARLNSGELVLRLGADRPAGDMTLLETGEPVYSPITQEGPLLTEDLIRETEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDWTDNEASTEDSDVFDSGESLSARGQLSRRMQKEGNLWRELWETSKPVPAVKQAPLFDEDLAVEGILNAFEDIHPSDLFGQLFVSLLGLGFAIAEPMLSSNSDFSKLFYDCKEYIIAACQSNKLNEKVDDLVQVYETVEKMLLNPEEALKMIKQTEESTMVTDEPRSPFKRLSLIFGGKDKLLRKSVSKDQTNDEEKSSRQSFSSFFDSKSPLFGKKPPKSGSPSSEKSSLDTGWTVV 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01880 704 Coils Coil 89 109 - -
Pumo9g01880 704 MobiDBLite consensus disorder prediction 652 704 - -
Pumo9g01880 704 Pfam Rab3 GTPase-activating protein catalytic subunit 385 537 IPR026147 -
Pumo9g01880 704 MobiDBLite consensus disorder prediction 49 67 - -
Pumo9g01880 704 MobiDBLite consensus disorder prediction 38 70 - -
Pumo9g01880 704 MobiDBLite consensus disorder prediction 688 704 - -
Pumo9g01880 704 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 47 693 IPR045700 GO:0005096|GO:0043547
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01880 Pumo-Chr9 47923954 47931456 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01880 K18270 - gmx:100818643 1251.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01880 9 47923954 47931456 Pumo9g01880 9 47923954 47931456 ECH
Pumo1g00875 1 13378055 13385884 Pumo9g01880 9 47923954 47931456 PCT