LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo9g01811	ATGCTGTATTCACTCAATTTTGTTAATGCCGGCGGGTCCTTTTGCAGTAACAAGATAAGAGTTATGGATTCTCCCTACACAAGTATAGTCTTTGATAAAATTCAGAAATTTGAGCCAGAGCATGCTAGAAAGATAATTGGCTATCTCCTCTTTCAAGGCCATGGAGAACAAGAAATGGCTAAATTGGCTTCATGCCCCGACTATTTCATCCGTGAAGTGGCAGTTCAGGCCAAAAAGGAACTCCAAAGGTTGGCTGCTAAACCAGATATGCTCCCAATTTCACGTACTGTCAACCCTCAACAAGGTTTAAGCGATTTATCAGTAATCTCCCCTAGAACTCCTACTTCACCAAACTTTCAGGTGCCTCCTCCCTATTGGGATCCACAATCTGCTGGCAACATCAATCCTGACTTTATGGGAATGAATTACTTGGATTCTATTGTAGAACTTCAGAAGCAGACACAGATGCTCACTTTGGATAATCGAATAGATGCTCTAAATACTGGGACTGGAGGGATTGCCAATGATTACTATGGCTTAGATGCTTCTGCTGCCAATTTGGGTGGAAAATCTGGGAGAAGGTTTTCTGAATTTCCAATGAAGATATGTCACTATTTCAACAAAGGATTCTGTAAGCATGGAACTAGCTGCAGATTCTACCACGGGCAAGTTGTCCCTGAGAATTTCTCTCAGATGTATGGAAATGATGCTATTAGTGAGGAACAGGTGTTTTCCCCGGGGTCACTGGCACAGTTAGAGTCTGAAATTATTGAGCTCCTAAGATCAAGAGGCGGTCCAATGTCAATTGCTTCCCTGCCAATGGCATACTACGATAAATATAAAAAGGTACTGCAAGCAGATGGTTACTTAACTGAGAGCCAGAGGCATGGTAAGTCTGGCTATAGTTTGACAAAGCTTCTTGCACGACTGAAAAATAGTATTCGGCTAATAGGCAGACCTCATGGACAGCATTCAGTGGTTCTGGCAGAAGATGCTCCCACACAAATGCAAAAAGGAGATTTTGCTCGAAATATCAGTGCTTCACGACAAATATATCTGACGTTCCCAGCTGACAGCACTTTCACAGAGGATGATGTCTCAAACTACTTTAACACATTTGGACCTGTTTCAGATGTCAGAATTCCAAACCAGCAGCGAAGGATGTTTGGATTTGTGACATTTGTTCATTCAGAAACTGTTAAAAGTGTCTTGGATAAGGGGAATCCCCATTGTGTTCGGGGTTCTCGGGTGCTTGTGAAACCTTACCGGGAGAAGGCAAAGGTTAATGAAAGGAAGTACACAGATAGAGTTGAGCACTCTGTTTGTTATTCACCACACTATGTAGATATGGACGCTGAACTTAACTCAATTCCAAGAAGTTTTGGGAACCATAGATCCATTAGGAGACAGCTACAGCTGATTGAAGAGGAAGAGCAGGAGCAAGCCCTGGAACTTCAGAGGAGAAGTCATGCGCAGCTGCAGTTTGCCCAAAAATCTTTCTCCAATTCACCTCATTTTAGCTTCTCCATGGATGAGTCAAGGATTTCAGATGATCAATTCAATTTCCAGCCAGCAGAAGAATCCTTCAGTTTTCCACTGCATGCCAAATCCAGGCATACAGACTCCAATTACTCTGATGAGGACAGCAATCAAGGACTCAATCTCCCGGACAGTCCATTCGCATTTCCACTAGATAGTGGGATGTAA	1707	0.4288	MLYSLNFVNAGGSFCSNKIRVMDSPYTSIVFDKIQKFEPEHARKIIGYLLFQGHGEQEMAKLASCPDYFIREVAVQAKKELQRLAAKPDMLPISRTVNPQQGLSDLSVISPRTPTSPNFQVPPPYWDPQSAGNINPDFMGMNYLDSIVELQKQTQMLTLDNRIDALNTGTGGIANDYYGLDASAANLGGKSGRRFSEFPMKICHYFNKGFCKHGTSCRFYHGQVVPENFSQMYGNDAISEEQVFSPGSLAQLESEIIELLRSRGGPMSIASLPMAYYDKYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIGRPHGQHSVVLAEDAPTQMQKGDFARNISASRQIYLTFPADSTFTEDDVSNYFNTFGPVSDVRIPNQQRRMFGFVTFVHSETVKSVLDKGNPHCVRGSRVLVKPYREKAKVNERKYTDRVEHSVCYSPHYVDMDAELNSIPRSFGNHRSIRRQLQLIEEEEQEQALELQRRSHAQLQFAQKSFSNSPHFSFSMDESRISDDQFNFQPAEESFSFPLHAKSRHTDSNYSDEDSNQGLNLPDSPFAFPLDSGM	568

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo9g01811	568	CDD	RRM_AtC3H46_like	351	420	IPR034365	-
	Pumo9g01811	568	PANTHER	RNA-BINDING (RRM/RBD/RNP MOTIFS)	23	563	-	-
	Pumo9g01811	568	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	200	223	IPR000571	GO:0046872
	Pumo9g01811	568	SUPERFAMILY	CCCH zinc finger	199	222	IPR036855	GO:0046872
	Pumo9g01811	568	SMART	rrm1_1	350	420	IPR000504	GO:0003723
	Pumo9g01811	568	ProSiteProfiles	Zinc finger C3H1-type profile.	197	224	IPR000571	GO:0046872
	Pumo9g01811	568	MobiDBLite	consensus disorder prediction	104	124	-	-
	Pumo9g01811	568	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	349	424	IPR000504	GO:0003723
	Pumo9g01811	568	SMART	c3hfinal6	197	223	IPR000571	GO:0046872
	Pumo9g01811	568	SUPERFAMILY	RNA-binding domain, RBD	359	431	IPR035979	GO:0003676
	Pumo9g01811	568	Gene3D	-	349	430	IPR012677	-
	Pumo9g01811	568	Pfam	OST-HTH/LOTUS domain	248	326	IPR025605	-
	Pumo9g01811	568	Coils	Coil	468	488	-	-
	Pumo9g01811	568	ProSiteProfiles	OST-type HTH domain profile.	248	330	IPR025605	-
	Pumo9g01811	568	Gene3D	-	195	255	-	-
	Pumo9g01811	568	MobiDBLite	consensus disorder prediction	531	568	-	-
	Pumo9g01811	568	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	360	416	IPR000504	GO:0003723
	Pumo9g01811	568	FunFam	zinc finger CCCH domain-containing protein 53-like isoform X2	356	427	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo9g01811	Pumo-Chr9	47246083	47251236	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo9g01811	-		-	gmx:100818984	1020.38

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo9g01811	9	47246083	47251236	Pumo9g01811	9	47246083	47251236	ECH
	Pumo1g00826	1	12570157	12574640	Pumo9g01811	9	47246083	47251236	PCT