Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00826 ATGGATATTTCGGAGTACACAAGGATTGTTTTTGATAAACTTCAGAGATTTGAGCCTGAGCATGCTACAAAGATCATAGGGTATCTCCTTCTACAAGACCATGGAGAGCAAGACATGGTGAAATTGGCTTCACTCCCAGACCATTTAATCTGTGACGTGGCGTTCAAGGCCAGAAACGAGCTTCAAAGGTTGGCTGCTAGATCAGCCATTCAGCCAATTCAACTTCCCATCAACTCTCAACAACAAGGTTTAAGCCATTTGTCAGTAATCTCCCCTACTTCAGTAATCACCCCTGGCACTCCTACTTCACCAGCAAGCTTCCAGGTTCAATCTCCTCCCTATTGGGATCCTCAGTCTGCTAGCAATACCAATGCAGAATTTATGGCAATAGGTTATTTGGATTCTCTCTCTGAACTTCAAAAGCAGACCCCTTTGTTCAGTTTAGAGAATCATATAGATACTATAAATTCGGGGACTGCTGGGATTGCTAATGATTACTATGGCTTAGATGTTTCATCAGCTGGTAATTTGGGTGGAAAAAATGGTAGAAGGTTTGAATTTCCAGTCAAGACATGTCACTATTTCAACAAAGGGTTTTGTAAGCATGGAAATGGCTGTAGATATTATCATGGACAAGGTGTCCCTGATATATTCTCTCAAATGTATGGAAATGATACTTTTAATGATGATCAGGTGATTTCACCTGGGTCACTAGCACAATTGGAGTCAGAAATTGTTGAACTCCTAAAACTAAAAAAAGGTGGTTCTATATCAATTGCTTCCCTTCCAATGGCATACTATGATAAGTATAAAAAGGTGCTGCAGGCAGATGGCTACCTGACTGAGAGCCAGAGACACGGTAAGTCTGGCTACAGTTTGACAAAGCTTCTTGCACGGTTGAAAAATAGTATTCGGCTAATTGACAGGCCTCATGGGCAGCATTCGGTTGTTCTGGCAGAAGATGCTCCAAAGTTCAATGGAAAGGTTGACTATGGTAAATACATTAGTGCATCACGACAAATATATCTGACATTTCCGGCTGACAGCACTTTTAGCGAGGGTGATGTTTCAAACTACTTTAGCACTTTTGGGAAAGTCGAAGATGTAAGGATTCCAAGCCAAGAGAGAAGGATGTTTGGATTTGTGACATTTGATGATCCTGAAACTGTTAAAGTAATTTTGGACAAGGGAAATCCCCATTATGTTTGTGAATCACGGGTTCTTGTGAAACCTTATAAGGAGAAGCCAAAACTTATGCTCAGGAAGCACTCAGATAGAATCGAGCACTCTGCTTATTATTCACCACACTATGTAGACGTTGACACTGAACCTACTTCAATTCCGAGAAGTTGCAGGAACCCTCGATTTCTTAGGAGGCTCCTCATTGAACAGCAAGAGGAGGCGGCCCTCGAATTTCAGAGACGACGTTTTGCAGAGCTGCAACTAACCCAAAAATCTTCTTCACCCCATTTAGGCTTCAACACGGACGGGTTAAAAGTTTCACATGATCATTTCAATGTCCAGTCTGTAGAATCTCATAGTCATGCTCTGAATGACAAAGCTGGGTATACAGATAACAGTTACACCGATGAGGACAGCAATCAAGGACTGAATCTTCCAGACAGCCCATTTGCATTTCCAGTAGATAGTGGAATTTCAGCAGTAATGTAG 1671 0.4171 MDISEYTRIVFDKLQRFEPEHATKIIGYLLLQDHGEQDMVKLASLPDHLICDVAFKARNELQRLAARSAIQPIQLPINSQQQGLSHLSVISPTSVITPGTPTSPASFQVQSPPYWDPQSASNTNAEFMAIGYLDSLSELQKQTPLFSLENHIDTINSGTAGIANDYYGLDVSSAGNLGGKNGRRFEFPVKTCHYFNKGFCKHGNGCRYYHGQGVPDIFSQMYGNDTFNDDQVISPGSLAQLESEIVELLKLKKGGSISIASLPMAYYDKYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIDRPHGQHSVVLAEDAPKFNGKVDYGKYISASRQIYLTFPADSTFSEGDVSNYFSTFGKVEDVRIPSQERRMFGFVTFDDPETVKVILDKGNPHYVCESRVLVKPYKEKPKLMLRKHSDRIEHSAYYSPHYVDVDTEPTSIPRSCRNPRFLRRLLIEQQEEAALEFQRRRFAELQLTQKSSSPHLGFNTDGLKVSHDHFNVQSVESHSHALNDKAGYTDNSYTDEDSNQGLNLPDSPFAFPVDSGISAVM 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00826 556 Gene3D - 343 417 IPR012677 -
Pumo1g00826 556 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 346 417 - -
Pumo1g00826 556 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 548 - -
Pumo1g00826 556 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 415 IPR000504 GO:0003723
Pumo1g00826 556 ProSiteProfiles Zinc finger C3H1-type profile. 186 213 IPR000571 GO:0046872
Pumo1g00826 556 Pfam OST-HTH/LOTUS domain 237 316 IPR025605 -
Pumo1g00826 556 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 351 398 IPR000504 GO:0003723
Pumo1g00826 556 ProSiteProfiles OST-type HTH domain profile. 237 320 IPR025605 -
Pumo1g00826 556 MobiDBLite consensus disorder prediction 509 542 - -
Pumo1g00826 556 SUPERFAMILY RNA-binding domain, RBD 350 431 IPR035979 GO:0003676
Pumo1g00826 556 CDD RRM_AtC3H46_like 341 410 IPR034365 -
Pumo1g00826 556 SMART rrm1_1 340 410 IPR000504 GO:0003723
Pumo1g00826 556 MobiDBLite consensus disorder prediction 509 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00826 Pumo-Chr1 12570157 12574640 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00826 - - gmx:100806206 1010.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00826 1 12570157 12574640 Pumo1g00826 1 12570157 12574640 ECH
Pumo1g00826 1 12570157 12574640 Pumo9g01811 9 47246083 47251236 PCT