Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01778 ATGTGTATTACTAATCAGGAAGCTGTCAAGCAGTTCCAGTCCCTTATGGAAAACTTGGATGAGCAACAGAAGAACACATTCCAGAATATGCACCAGGGCTATCCATCAGAAACATTAGTACGGTTTCTCAAAGCACGGGACAGGAATGTTGTCAAAGCACATAAAATGTTAATTGATTGTTTACAATGGAGAGTGGAAAATGAGATTGACAACGTTCTAGCGAAGCCTATACCCCCTGATTTGTACAGACGTTTGCGAGATTCTCAACTTATAGGAATGTCTGGTTTCTCAAAGGAGGGCCTACCTGTCATTGCTGTTGGTGTTGGGCTCAGCAAATTTGATGAAGTGTTTGACAAATACTATGTACAGTCTCACATTCAAATGAACGAATATAGGGATCGGGTGATCTTGCCAACAGCTACAAAGAATCATGGACGGCACATTGACACTTGTGTGAAAGTCTTGGATATGACTGCTTTAAAACTCTCAGCACTGAACCAATTGAAGCTTTTGACTGCTATAACTACAATAGATGACTTGAACTATCCAGAAAGGACAGACGCATATTACATAGTTAATGTTCCATATGTATTCTCAGCGTGTTGGAAGGTTGTAAAGCCTCTTTTGCAAGAAAGAACAAGGAGGAAAGTCCACGTACTGAAAGGCTGTGGCATGGAGGAATTACTGAAGGTAATGGACTATGCATGCCTCCCACATTTTTGCAGAAAGGAAGGTTCCAGGGTGCACCGACATCATGCAGCTGGAAATACTGAAAATTGTTTCTCCTTTGATCATGTCTTCCATAAACAACTCTATAATTACATCAAGCAGCAAGCTATATTCATAGAGTCCATATTACCAATCAGACAGGATTCTTTCCATGTAGACTTACCGGAGCCAGACCCAGATGATGCCAAAATTGCCAAGACTATAGAAACTGAGTTCCACAAACTGGAAAGTCAGAATGGCCTTACCAACTGA 981 0.4108 MCITNQEAVKQFQSLMENLDEQQKNTFQNMHQGYPSETLVRFLKARDRNVVKAHKMLIDCLQWRVENEIDNVLAKPIPPDLYRRLRDSQLIGMSGFSKEGLPVIAVGVGLSKFDEVFDKYYVQSHIQMNEYRDRVILPTATKNHGRHIDTCVKVLDMTALKLSALNQLKLLTAITTIDDLNYPERTDAYYIVNVPYVFSACWKVVKPLLQERTRRKVHVLKGCGMEELLKVMDYACLPHFCRKEGSRVHRHHAAGNTENCFSFDHVFHKQLYNYIKQQAIFIESILPIRQDSFHVDLPEPDPDDAKIAKTIETEFHKLESQNGLTN 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01778 326 SMART sec14_4 85 246 IPR001251 -
Pumo9g01778 326 Pfam CRAL/TRIO domain 89 240 IPR001251 -
Pumo9g01778 326 Coils Coil 5 25 - -
Pumo9g01778 326 CDD SEC14 92 240 IPR001251 -
Pumo9g01778 326 Pfam CRAL/TRIO, N-terminal domain 8 59 IPR011074 -
Pumo9g01778 326 SUPERFAMILY CRAL/TRIO N-terminal domain 6 73 IPR036273 -
Pumo9g01778 326 SUPERFAMILY CRAL/TRIO domain 80 241 IPR036865 -
Pumo9g01778 326 Gene3D - 4 277 IPR036865 -
Pumo9g01778 326 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 1 325 - -
Pumo9g01778 326 SMART CRAL_TRIO_N_2 35 60 IPR011074 -
Pumo9g01778 326 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 78 238 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01778 Pumo-Chr9 46934806 46938473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01778 29 318 Acyl Lipid Metabolism Gene Families AT1G55840 67.010 5.85e-154 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01778 K26544 - gmx:100815791 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01778 9 46934806 46938473 Pumo9g01778 9 46934806 46938473 ECH
Pumo1g00758 1 11367199 11372410 Pumo9g01778 9 46934806 46938473 PCT