Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00758 ATGGGTGGTGGAAATCATGAGGCAGTCAAGCAGCTGCAGTCCCTGATGGAAGATGTGGATGATGAGCAGCTGAAGAACACATTCAAGAATATGCATCAGGGTTATCCAACTGAAACGTTAATACGGTTTCTCAAAGCAAGGGACTGGAATGTTGCCAAGGCCCATAAAATGTTAATTGATTGTTTGAACTGGAGAGTGGAAAATGAGATTGACAAAGTTTTAACGAAGCCTATCCCTGCAGATTTGTACAGAGCCGTGCGGGATTCTCAACTCTTAGGAATGTCTGGTTACTCAAAGGAGGGTCTACCTGTCATTGCTGTGGGTGTTGGGCTCAGTACATATGACAAAGCATCTGACAAATACTATATACAATCACACATCCAAATGAATGAATATAGGGATCGAGTGATCTTGCCAACAGCTACGAAGAAGCATGGACAATACATTGGCACCTGTGTGAAAGTCCTGGATATGACTGGTTTAAAATTTTCAGCACTGAGCCAATTGAGGTTGTTGACTGCTATATCTACAATAGATGACTTGAACTACCCAGAAAAGACAGATACATATTATATTGTTAACGCGCCATATGTATTCTCGGCATGTTGGAAGGTTGTAAAGCCTCTTTTGCAAGAAAGAACAAGGAGAAAAATCCAGGTGCTGCAAGGTTGTGGGAAGGAGGAATTACTGAAGGTAATGGACTATGCATCCCTCCCACACTTCTGCAGAAAAGAAGATTCCAAGTCATCCAAACATCATGCATCAGGAAACACTGAAAATTGTTTCTCCTTCAATCATGTCTTCCATCAACAACTCTACAATCACATCAAGCAGCAAGCCATCATTATGGAGTCAATCTCACCAATCAGACAAGGGTCCTTCTATGTAGACATACCAGAGCCAGACCCTGATGATGCCAAAATAGCCAAGACCATAGAAACCGAGTTCCACAAATTGGAGAATCAGAAGAATGGCTTTACCAATACCAACTCACTAAATGGCCTTACAGTTAATGGCCATTGA 1023 0.4194 MGGGNHEAVKQLQSLMEDVDDEQLKNTFKNMHQGYPTETLIRFLKARDWNVAKAHKMLIDCLNWRVENEIDKVLTKPIPADLYRAVRDSQLLGMSGYSKEGLPVIAVGVGLSTYDKASDKYYIQSHIQMNEYRDRVILPTATKKHGQYIGTCVKVLDMTGLKFSALSQLRLLTAISTIDDLNYPEKTDTYYIVNAPYVFSACWKVVKPLLQERTRRKIQVLQGCGKEELLKVMDYASLPHFCRKEDSKSSKHHASGNTENCFSFNHVFHQQLYNHIKQQAIIMESISPIRQGSFYVDIPEPDPDDAKIAKTIETEFHKLENQKNGFTNTNSLNGLTVNGH 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00758 340 SUPERFAMILY CRAL/TRIO N-terminal domain 26 76 IPR036273 -
Pumo1g00758 340 SMART sec14_4 86 247 IPR001251 -
Pumo1g00758 340 Pfam CRAL/TRIO, N-terminal domain 9 60 IPR011074 -
Pumo1g00758 340 CDD SEC14 83 241 IPR001251 -
Pumo1g00758 340 Coils Coil 5 25 - -
Pumo1g00758 340 Pfam CRAL/TRIO domain 90 241 IPR001251 -
Pumo1g00758 340 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 79 250 IPR001251 -
Pumo1g00758 340 SMART CRAL_TRIO_N_2 36 61 IPR011074 -
Pumo1g00758 340 Gene3D - 5 282 IPR036865 -
Pumo1g00758 340 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 1 328 - -
Pumo1g00758 340 SUPERFAMILY CRAL/TRIO domain 81 241 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00758 Pumo-Chr1 11367199 11372410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00758 30 323 Acyl Lipid Metabolism Gene Families AT1G55840 69.492 1.21e-163 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00758 K26544 - gmx:100817955 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00758 1 11367199 11372410 Pumo9g01778 9 46934806 46938473 PCT