Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01339 ATGGCGGACTTTCCCATCATTCTAGAGGGGACCCTGTGGGGTTTCAATGTGATGGTGGTTATATCCTACAAGGAGAAGGATGTGAAATGTTGTGTTGGTTTAGGGTGCAATTCTTTGTGGGGTTGCAAAGAGAGTTTACCTTTACCGGTTCAAGCAGTGGGAGAGGAACTTCCTCAGCTCATTTCTCCTCGTGTTGCTCCTACTAGACATGAGAAGAATGGCATTCTTGCAAGCGATGTCTCTCTTTCTCCGCGGTCATTGTTGTATAATTTTAGTCCTTTGGTTAAGTTCCAAGGCCACATTTACCACCTGGCAAAGGATCAGAACGGTTGTCGCTTCCTGCAGAGGATGGTTGATGAGGGTACCTCCGGAGATGTGCAAATAGTGTTTAATGGGGTCATAGATGATGTTGTTGAGCTTATGATGGACCCTTTTGGGAACTACCTTGTGCAAAAGTTGCTTGATGTGTGTGGAGAAGATGAAAAGTTGCAGGTTGTGTCAATGTTGACTAAAGAAACAGGGCAGCTAGTCAAAACCTCTTTGAATACACACGGGACTCGGGTGGTTCAGAAATTGATTGCGACTGTCGACTCTAGAAAACAAATTGCATTGCTGAGGTCTGCCATTCAACCTGGTTTTCTTGATCTTATTAAGGATCTGAATGGAAATCATGTCATACAGCGTTGCTTGCAATACTTTAGCTGTAAAGATAATGAGTTTATTTTTGATGCTGCTACAAAGTTTTGTGTTAATATAGCTACTCATCAACATGGGTGTTGTGTACTACAACGTTGCATTGATTATTCCACTGGAAAGTACCAAGAGAAGCTGGTAAAGGAAATATGCAGACATGGGCTTCTCCTTGCTCAAGATCCATTTGGAAATTATGTTGTTCAGTATATTATAGAGATGGAGAACCCAAGTGCATCATCCAGACTGCATTCTCAGTTCAAAGGGAACTACGCCAACCTCTCCATGCAAAAATTTAGCAGTCATGTGGTTGAAAAATGCCTCGTGCATCTTGCAGAGAGCAGGTCAAGGATAGTCCAAGAATTGTTGTCTTTTCCTCACTTTGGGCGTTTGCTACAAGACCCATATGCCAACTATGTTGTTCAACGTGCTCTCGGAGTGACCAAGGGCTCTCTGCATGCATCTCTAGCCGAAGCAGTTCGCCCCCACAAAATGTTGCGCACCAGCCCTTATTGCAAAAGGATTTTCTCGAGGAACCTGCTTAACAAGTGA 1242 0.4364 MADFPIILEGTLWGFNVMVVISYKEKDVKCCVGLGCNSLWGCKESLPLPVQAVGEELPQLISPRVAPTRHEKNGILASDVSLSPRSLLYNFSPLVKFQGHIYHLAKDQNGCRFLQRMVDEGTSGDVQIVFNGVIDDVVELMMDPFGNYLVQKLLDVCGEDEKLQVVSMLTKETGQLVKTSLNTHGTRVVQKLIATVDSRKQIALLRSAIQPGFLDLIKDLNGNHVIQRCLQYFSCKDNEFIFDAATKFCVNIATHQHGCCVLQRCIDYSTGKYQEKLVKEICRHGLLLAQDPFGNYVVQYIIEMENPSASSRLHSQFKGNYANLSMQKFSSHVVEKCLVHLAESRSRIVQELLSFPHFGRLLQDPYANYVVQRALGVTKGSLHASLAEAVRPHKMLRTSPYCKRIFSRNLLNK 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01339 413 CDD Pumilio 99 408 IPR033712 GO:0003723
Pumo9g01339 413 ProSiteProfiles Pumilio RNA-binding repeat profile. 132 167 IPR001313 GO:0003723
Pumo9g01339 413 ProSiteProfiles Pumilio RNA-binding repeat profile. 351 388 IPR001313 GO:0003723
Pumo9g01339 413 FunFam Pumilio homolog 9 87 413 - -
Pumo9g01339 413 Pfam Pumilio-family RNA binding repeat 137 169 IPR001313 GO:0003723
Pumo9g01339 413 Pfam Pumilio-family RNA binding repeat 360 375 IPR001313 GO:0003723
Pumo9g01339 413 Pfam Pumilio-family RNA binding repeat 176 203 IPR001313 GO:0003723
Pumo9g01339 413 Pfam Pumilio-family RNA binding repeat 320 353 IPR001313 GO:0003723
Pumo9g01339 413 Pfam Pumilio-family RNA binding repeat 100 131 IPR001313 GO:0003723
Pumo9g01339 413 Pfam Pumilio-family RNA binding repeat 287 307 IPR001313 GO:0003723
Pumo9g01339 413 Pfam Pumilio-family RNA binding repeat 213 243 IPR001313 GO:0003723
Pumo9g01339 413 Pfam Pumilio-family RNA binding repeat 249 282 IPR001313 GO:0003723
Pumo9g01339 413 SMART pum_5 280 315 IPR001313 GO:0003723
Pumo9g01339 413 SMART pum_5 171 206 IPR001313 GO:0003723
Pumo9g01339 413 SMART pum_5 208 243 IPR001313 GO:0003723
Pumo9g01339 413 SMART pum_5 132 167 IPR001313 GO:0003723
Pumo9g01339 413 SMART pum_5 244 279 IPR001313 GO:0003723
Pumo9g01339 413 SMART pum_5 96 131 IPR001313 GO:0003723
Pumo9g01339 413 SMART pum_5 353 388 IPR001313 GO:0003723
Pumo9g01339 413 SMART pum_5 316 350 IPR001313 GO:0003723
Pumo9g01339 413 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 71 413 IPR033133 GO:0003723
Pumo9g01339 413 Gene3D - 85 411 IPR011989 -
Pumo9g01339 413 ProSiteProfiles Pumilio RNA-binding repeat profile. 208 243 IPR001313 GO:0003723
Pumo9g01339 413 ProSiteProfiles Pumilio RNA-binding repeat profile. 168 206 IPR001313 GO:0003723
Pumo9g01339 413 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 87 408 - -
Pumo9g01339 413 ProSiteProfiles Pumilio RNA-binding repeat profile. 96 131 IPR001313 GO:0003723
Pumo9g01339 413 ProSiteProfiles Pumilio RNA-binding repeat profile. 244 279 IPR001313 GO:0003723
Pumo9g01339 413 ProSiteProfiles Pumilio RNA-binding repeat profile. 280 315 IPR001313 GO:0003723
Pumo9g01339 413 SUPERFAMILY ARM repeat 94 407 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01339 Pumo-Chr9 39086506 39091070 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01339 - - gmx:100788865 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01339 9 39086506 39091070 Pumo9g01339 9 39086506 39091070 ECH
Pumo9g01339 9 39086506 39091070 Pumo10g01147 10 14793958 14797278 PCT