Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01147 ATGGACTCTCCCATGACCGCCAGAATGCTGAAAATGTCAGAGGACGCAGAAACGAGGTTCGTTGGGATTCCCGATGCACCCACAACACCATCACCGTGTCTCCGCGTCCTTCACCCTGACCACGTGGCCGTTGGGTCCCCCATCACCAGGGTCCCTCTCGCTCCTTATTCAGCACCACCTCCTTCTCCCAGATTGTGGTTAGACCCAGACCCCTCCACTCTCAATCACCCCAAGTGGGCCCATGATTTCTCACTCGCCAACGATTTCTCCAGAATCAACCTCTTCGATGCAACCCAAACCAATAATATGCCTTTGGACCCCTACGCTTCTTATTTCAATGAAACAGAAACCCTCCCATATGTTAACAACACCCAAGCCAACATGGCTTTGGACCCCTACGCTTCCTGTTTCAATGAAACAGGAACCCTCCCGTATAATCAGCATGTTAACAATGTGGGTTTATTCGATAAAGGTTACGCTTTTGCCACCCCAGATGATCACGCCAACCACGTCTATCATCATCTCGTCGATCAGATCAGGAGGAAGCAACTACCGGGCACAAGTGATAATAACTATCAGATTCTTCTTCGTGATCGTTATATGGCTTCACAGTCTCTCGGAGGAGTCAAAAGCCCCATTAGGTTTTCTCCCATAACGCCTCAATATCCTCCCAATGCCAATACTCCGTCACATTATTACGTTGCCGCAAAAGAAAAAGCTGACCTTCCCCCTTTTGGGCCTTTTCTATCTCCAAGGAGAATCGGTGCTGACACTGCAACCTTTAGGTGTGACAACAGTGTAATCCTACAAGGGAGAGATGCAAAACACTACTTTGACAACGGGTACAGTTCTTATAGAAGGAGTGCTCGTGATGAGGCTGCAATTCATGGTTTGGGTGGGAGTGTTTCTAAGAACTATTTTTCTGCTGCTCCTTCCGGTCAAAGAAGTGGTGAATTCTCACTGCCCATGCTGCTGGATTTTTATTCTGTGCCTGACGCGCAGTGCTACATATACAACCTGGCAAAGGATCAGAACGGTTGTCGTTTTCTGCAGCGGATGGTGGATGAGGGGACCTACCAAGATATTTGTATGGTATTCGAGGGAATCATTGGGAGTGTTGTGGAACTTATGATAGACTCTTTCGGGAATTATCTGGTGCAGAAGTTGCTCGATGTTTGCACCGATGATCAACGCCTGCAGATTGTGCTCATGTTGACTAATCAACCAGGCCAGCTCGTTAGAATCTCTTTAAATACTCACGGCACACGCGTGGTGCAGAAGTTGATTGAGACCCTCACCTCCGCGGAACAAGTTTCATTGGTGAAGTCTGCCATTCAACCGGGTTTTCTTGATCTTATCAAGGATCTGAATGGAAATCACGTCATTCAACGTTGCTTGCAATGCCTTAGCTGTCAAGATAATCAGTTTATTTTTGATGCTGCTGTGAAGTTTTGTGTTGAAATAGCTACTCATCAGCATGGATGTTGTGTACTGCAACGTTGCATTCATCACTCTGTGGGAAAGAATCGAGATAAGCTGGTCACAGAAATATGCAAACACGGACTTCTACTCGCTCAGGATCCATATGGAAATTATGTTGTGCAGTATGTTATAGAGTCGGATACTCCAGCTGTCTCAGCCAAACTGCTTAGTCAGTTCAAAGGGAACTTTGTAAATTTGTCTACACAGAAATTCAGCAGTCATGTGGTCGAAAAATGCCTTAAGCATATGGGAGACAGCAGGTCAAGGATAATTCGAGAATTACTGTCTGTTCCTCGTTTTGAACAGTTGTTGCAAGACCCATATGCCAACTATGTCATTCAATCTGCTCTAGTTTTTGCCAAGGGTCCTCTGCATGCATCTTTGGCTGAAGCAGTTCGTCCTCACAAAATGTTGCGCACCAGTCCATATTGCAAGAGGATTTTCTCGGGAAGCTTGCTCAAGAAGTGA 1950 0.4626 MDSPMTARMLKMSEDAETRFVGIPDAPTTPSPCLRVLHPDHVAVGSPITRVPLAPYSAPPPSPRLWLDPDPSTLNHPKWAHDFSLANDFSRINLFDATQTNNMPLDPYASYFNETETLPYVNNTQANMALDPYASCFNETGTLPYNQHVNNVGLFDKGYAFATPDDHANHVYHHLVDQIRRKQLPGTSDNNYQILLRDRYMASQSLGGVKSPIRFSPITPQYPPNANTPSHYYVAAKEKADLPPFGPFLSPRRIGADTATFRCDNSVILQGRDAKHYFDNGYSSYRRSARDEAAIHGLGGSVSKNYFSAAPSGQRSGEFSLPMLLDFYSVPDAQCYIYNLAKDQNGCRFLQRMVDEGTYQDICMVFEGIIGSVVELMIDSFGNYLVQKLLDVCTDDQRLQIVLMLTNQPGQLVRISLNTHGTRVVQKLIETLTSAEQVSLVKSAIQPGFLDLIKDLNGNHVIQRCLQCLSCQDNQFIFDAAVKFCVEIATHQHGCCVLQRCIHHSVGKNRDKLVTEICKHGLLLAQDPYGNYVVQYVIESDTPAVSAKLLSQFKGNFVNLSTQKFSSHVVEKCLKHMGDSRSRIIRELLSVPRFEQLLQDPYANYVIQSALVFAKGPLHASLAEAVRPHKMLRTSPYCKRIFSGSLLKK 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01147 649 SMART pum_5 589 624 IPR001313 GO:0003723
Pumo10g01147 649 SMART pum_5 480 515 IPR001313 GO:0003723
Pumo10g01147 649 SMART pum_5 552 586 IPR001313 GO:0003723
Pumo10g01147 649 SMART pum_5 368 403 IPR001313 GO:0003723
Pumo10g01147 649 SMART pum_5 332 367 IPR001313 GO:0003723
Pumo10g01147 649 SMART pum_5 444 479 IPR001313 GO:0003723
Pumo10g01147 649 SMART pum_5 516 551 IPR001313 GO:0003723
Pumo10g01147 649 SMART pum_5 407 442 IPR001313 GO:0003723
Pumo10g01147 649 CDD Pumilio 327 643 IPR033712 GO:0003723
Pumo10g01147 649 ProSiteProfiles Pumilio RNA-binding repeat profile. 407 442 IPR001313 GO:0003723
Pumo10g01147 649 SUPERFAMILY ARM repeat 334 642 IPR016024 -
Pumo10g01147 649 Gene3D - 326 646 IPR011989 -
Pumo10g01147 649 ProSiteProfiles Pumilio RNA-binding repeat profile. 368 404 IPR001313 GO:0003723
Pumo10g01147 649 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 301 649 IPR033133 GO:0003723
Pumo10g01147 649 ProSiteProfiles Pumilio RNA-binding repeat profile. 444 479 IPR001313 GO:0003723
Pumo10g01147 649 Pfam Pumilio-family RNA binding repeat 523 550 IPR001313 GO:0003723
Pumo10g01147 649 Pfam Pumilio-family RNA binding repeat 373 402 IPR001313 GO:0003723
Pumo10g01147 649 Pfam Pumilio-family RNA binding repeat 411 441 IPR001313 GO:0003723
Pumo10g01147 649 Pfam Pumilio-family RNA binding repeat 337 370 IPR001313 GO:0003723
Pumo10g01147 649 Pfam Pumilio-family RNA binding repeat 449 479 IPR001313 GO:0003723
Pumo10g01147 649 Pfam Pumilio-family RNA binding repeat 485 518 IPR001313 GO:0003723
Pumo10g01147 649 Pfam Pumilio-family RNA binding repeat 556 589 IPR001313 GO:0003723
Pumo10g01147 649 Pfam Pumilio-family RNA binding repeat 596 615 IPR001313 GO:0003723
Pumo10g01147 649 ProSiteProfiles Pumilio RNA-binding repeat profile. 552 590 IPR001313 GO:0003723
Pumo10g01147 649 FunFam Pumilio homolog 9 325 649 - -
Pumo10g01147 649 ProSiteProfiles Pumilio RNA-binding repeat profile. 480 515 IPR001313 GO:0003723
Pumo10g01147 649 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 162 642 - -
Pumo10g01147 649 ProSiteProfiles Pumilio RNA-binding repeat profile. 516 551 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01147 Pumo-Chr10 14793958 14797278 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01147 - - gmx:100813309 1006.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01147 10 14793958 14797278 Pumo10g01147 10 14793958 14797278 ECH
Pumo9g01339 9 39086506 39091070 Pumo10g01147 10 14793958 14797278 PCT