Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01335 ATGGAAATGAAGGCAAAGAACAACAACAACAAGGTGGGGAGTGAATTGGGTTGTGGTCTCATGGGGAGGATTCTCCACCTCAAAAGCCACAAGATGAGAAAAGCATCTGTTCACTCCCTGCCCTTGAAGAATGCACAGAGTGATGATGATGATGTCAAAAGTGAAGAACACAAGAAGATCCCAAATGAAGAACCAAAGGTTGCAAGAAAAACCTGCACTGGCACTGAGCCACACAAGCTGAGTGGTGCAGAACAGAAACCTGCCAGAAAGAGTGCCTCTATTCACCACCAACAACCTTGTACAAATCGAAACAATCAACATCAGAGGCATTCAGATGTTGCTGCAAGAAGCTCAACATCATCGTCCTCTAGTGCTTCAATCACTTATCACACTAAGGTTCAACAAAACAAGGACAAGGATCATGAGAGCAAGCCACATAGAGACCCCACTGGAAATTCTCTTGCACTTGCTAGGATAAGTACTAGTACTAGCAATGAGAACAAGAACTCTCAATTGAAACTCACTGGGAATTTGCTTGTGAATAACACCCCAAGAAGGAAGAGTGTGGAATACATGCCTAAGAGTGCAGAGTTGAACTCTGTTCCCAGTTCTTACACCAATGCAAGCAGAGGCTTGATGGGGAATATCATGAGGAGGAACAGCAATGGCAATGATTTTGCACAGTTTTTGAGTCCAAGGCTGAACAAAGTGAACCCTGAGGTGTTGAAATCCATGGGAAATGAAGCATACAAGCTGGGAAGATTTGAAGAGGCCTTGGCTTTGTATGACCGAGCAATTGTACTTGATTCAAATAAGGCAATATATCATTGCAACAAAAGTGCAGCTTTAATTGGCTTAGGAAGGCTTCAGGAAGCAATTGTTGAGTGTGAGGAATCTATCAAGCTGGACCCTTCTTATGTCAGAGCCCACAATCGTTTGGCCACAATATATCTCAGGTTGGGGGAAGCAGAAAAAGCACTGGATTGCAATCACTCAACCCCATATGCTGATTCAATACTTGCTTTCCAAGCTCAGACTCTTCAAAACCACCTTAACAAATGCATAGAAGCACGGAAAGTAAATGCATGGAGTGATATACTAAAGGAAACACAGTCTGCAATATCCTTAGGTGCTGATTCAGCTCCACAGGTCTATGCTTTACAAACTGAAGCCTTGCTGAAGCTCCTGAGATATCAAGAGGCCTATGTCATCTACGATAAAATGCCAAAATTTTCACTTGATTGGTGTACCAAGATGTTTGGCCCGTCTCGCAGCGCTTACCTGTTGATGATAGGCACACAGATTTACTTGGCTGCCGGCAGGTTTGAGGAAGCTGTGACATCAGCTCAGCAAGCAGCTAAAGTTGATCCAGGCAATAGAGAAGTGAGTGCAATGGTAAGGAGGGCCAGAGCAGCAACATCAGCTAGAATGAGTGGAAACTTGCTCTTCAAGGCGACAAAATTCACCGAAGCTTGTGCAGTGTACAACGAAGGACTAGAACATGATCCACACAACTCAGTTCTGCTATGCAACAGAGCTGCATGTCGTTCTAAGCTTGGCCAATATGAGAAAGCAATTGAAGATTGTAACGCGGCACTTATGGTTCAGCCAGGTTATAGCAAAGCAAAGCTAAGGAGGGCAGATTGCAATGCCAAGTTGGAACGGTGGGAAGCTGCTATTCAAGACTATGAAATGCTATTAAGGGAAAGGCCAGGGGATGAGGAAGTGGCAAGGGCTTTGTTTGAAGCTCAACTCCAACTCAAGATGCTGCGTGGTGAAGATATTAAGGACTTGAAATTTGGTTCAAACTTGGTTTCCATCTCAACTAATGATCGGTTCAGACATTATGTAACCTCACCTGGAATGGCAGTGGTGCTATTTAGCAACAAGGCAACCCACAAGAAAGTGTTACTTGAGTTGGAGCAAACCAGCAAGAGATTCCCATCAGTTAATTTCCTCAAGGTGGAAATTGAAGACCACCCCTACTTAGCAAAGTCAGAAGGTGTGAGCTCTATCCCAGCCTTCAAAATTTACAAGAACGGATCAAGGGTTAAAGAAATCAAAGGCAACAACCACGAGTTATTAGAAAGATCAGTTAAATTGTATAGCAGCTGA 2115 0.4378 MEMKAKNNNNKVGSELGCGLMGRILHLKSHKMRKASVHSLPLKNAQSDDDDVKSEEHKKIPNEEPKVARKTCTGTEPHKLSGAEQKPARKSASIHHQQPCTNRNNQHQRHSDVAARSSTSSSSSASITYHTKVQQNKDKDHESKPHRDPTGNSLALARISTSTSNENKNSQLKLTGNLLVNNTPRRKSVEYMPKSAELNSVPSSYTNASRGLMGNIMRRNSNGNDFAQFLSPRLNKVNPEVLKSMGNEAYKLGRFEEALALYDRAIVLDSNKAIYHCNKSAALIGLGRLQEAIVECEESIKLDPSYVRAHNRLATIYLRLGEAEKALDCNHSTPYADSILAFQAQTLQNHLNKCIEARKVNAWSDILKETQSAISLGADSAPQVYALQTEALLKLLRYQEAYVIYDKMPKFSLDWCTKMFGPSRSAYLLMIGTQIYLAAGRFEEAVTSAQQAAKVDPGNREVSAMVRRARAATSARMSGNLLFKATKFTEACAVYNEGLEHDPHNSVLLCNRAACRSKLGQYEKAIEDCNAALMVQPGYSKAKLRRADCNAKLERWEAAIQDYEMLLRERPGDEEVARALFEAQLQLKMLRGEDIKDLKFGSNLVSISTNDRFRHYVTSPGMAVVLFSNKATHKKVLLELEQTSKRFPSVNFLKVEIEDHPYLAKSEGVSSIPAFKIYKNGSRVKEIKGNNHELLERSVKLYSS 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01335 704 MobiDBLite consensus disorder prediction 92 132 - -
Pumo9g01335 704 Pfam TPR repeat 246 278 - -
Pumo9g01335 704 SUPERFAMILY TPR-like 476 588 IPR011990 GO:0005515
Pumo9g01335 704 SMART tpr_5 425 459 IPR019734 GO:0005515
Pumo9g01335 704 SMART tpr_5 540 573 IPR019734 GO:0005515
Pumo9g01335 704 SMART tpr_5 472 505 IPR019734 GO:0005515
Pumo9g01335 704 SMART tpr_5 239 272 IPR019734 GO:0005515
Pumo9g01335 704 SMART tpr_5 307 339 IPR019734 GO:0005515
Pumo9g01335 704 SMART tpr_5 506 539 IPR019734 GO:0005515
Pumo9g01335 704 SMART tpr_5 273 306 IPR019734 GO:0005515
Pumo9g01335 704 Pfam Tetratricopeptide repeat 508 539 IPR001440 GO:0005515
Pumo9g01335 704 Pfam Tetratricopeptide repeat 542 572 IPR019734 GO:0005515
Pumo9g01335 704 Pfam Thioredoxin 610 695 IPR013766 -
Pumo9g01335 704 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 6 700 IPR044534 -
Pumo9g01335 704 Pfam Tetratricopeptide repeat 296 327 - -
Pumo9g01335 704 MobiDBLite consensus disorder prediction 35 153 - -
Pumo9g01335 704 ProSiteProfiles TPR repeat profile. 239 272 IPR019734 GO:0005515
Pumo9g01335 704 Gene3D Tetratricopeptide repeat domain 238 591 IPR011990 GO:0005515
Pumo9g01335 704 MobiDBLite consensus disorder prediction 44 73 - -
Pumo9g01335 704 Pfam Tetratricopeptide repeat 435 505 - -
Pumo9g01335 704 Coils Coil 546 566 - -
Pumo9g01335 704 ProSiteProfiles TPR repeat profile. 426 459 IPR019734 GO:0005515
Pumo9g01335 704 SUPERFAMILY TPR-like 238 461 IPR011990 GO:0005515
Pumo9g01335 704 SUPERFAMILY Thioredoxin-like 589 695 IPR036249 -
Pumo9g01335 704 Gene3D Glutaredoxin 598 703 - -
Pumo9g01335 704 MobiDBLite consensus disorder prediction 133 148 - -
Pumo9g01335 704 CDD TRX_family 613 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01335 Pumo-Chr9 39018247 39021863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01335 233 542 Glycosyltransferase AT3G04240 21.406 7.86e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01335 K09527 - gmx:100791862 1202.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01335 9 39018247 39021863 Pumo10g01152 10 14862371 14865887 PCT