Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01152 ATGGCAGAGAAAACCAAGAACAAGGTGGAGATTGACTTGGGTTGCGGTTTGGTGGGGAGAATTTTCCATCTCAAAACCAATAATAGGCCTAGAAAATCCTCTGTTCATTCGCTACCCGTGAAGGCTTGCAACACTGCACAACAGAGGGATCAGGCCAAAAACGAATCCAAACCCCCTCCAAACCATGAACCAAAGGTTCCAAGGGATAGCTCCATTGGAACCATTCCAACACTGAAAGTGGAGCAGAATCCAGCGAGAAAGAGTAGCTCTAGTCACCGTGCACCTTCTGCACACCAAAACACTCAAAATGGGAGAGCCTCGGACGCTGCAAGAACCTCAATTCAACGAAGCCATGACTCAAATGAAGAGACTAAACAACAACAGAAAGAGCACACTGTTGGTAATTCTCTGGAACTTGCTAGGATAATTACAAGCACTAGTCATCATCAAAACAACGAGACCAAATCCCCAGCCAAAGAATTTGTGTTACCAATCACTGGGAACTTGCTTGTGAATAGCAGCCCAAGAACTAGTGTTACCAAGAGCAAAGAGTTGAACACTCTGTCCGGTTCCTGTTCTTACAATAGTAACACTAACAAAGGCATAATGGGGAATATCATGAGGAAGAACAGCGACGAGCTTGCGCAATTTCGGAGTCCGAGGAACAGCAGAGTGGACCCTGAGGTGTTGAAGTCCATGGGGAATGAAGCCTACAAGCAGGGAAGATTTGAAGAGGCTTTGGCCTTGTATGACCGAGCCATTGCTGTTGACTCCAACAAGGCAACCTATCATTGCAATAAGAGCGCGGCTTTGATAGGCTTGGGAAGGTTTCTGCAGGCAATTGTTGAGTGTGAGGAAGCTATCAGGTTGGAGCCTTCTTATGGCAGAGCCCACACCCGTTTGGCAACAATTTATTTCAGATTGGGAGAAGCAGAAAAGGCACTGAATTGTAATGAAACAAGCCCATGTGTTGATACCGTCCTCGCTTTTCAAGCTCAGGCTCTTCAAAATCACCTTAGCAAATGCACTGAAGCACGGAAAGTCAAAGACTGGAAAGCTATACTAAAGGAAACACAGGCTGCGATATCCTTAGGTGCTGATTCAGCTCCACTGGTCTATTCTTTACAAGCTGAAGCTTTGCTGAAGCTCCTAAGACATCAAGAGGCACACACTACCTACGAGAAAATGCCAAAATTTGACCTTGATTGTTCTAACAAATTATTTGGCCCGGTTCGTAGTGCTTACCTATTGATGATAAGCGCCCAAATTTACTTGGCAGCCGGCAGGTTTGAGGATGCTGTAACAGCATCTCAGCAAGCAGCTAAACTAGATCCAAGTAGCTTTGAGGTGAATGCAGTGGTAAGGAGGGCCAGAGCAGTGACCTCAGCCAGAATGAGTGGTAACTTACTCTTCAAGGCATCAAAATTCTCAGAAGCATATGCCGTATACAATGAAGGACTAGAGCATGATCCTATACAACTCCCGTGTCGTTCTAAGCTAGGTCAATTCGAGAAAGCAATTGAAGATTGTAATGTAGCACTTATACTTCAGCCTAGTTATAGCAAGGCAAGGTTGCGGAGGGCAGATTGCAATGCCAAGTTGGAACGATGGGAAGCTGCCATTCAAGACTATGAGATGCTATTAAGAGAAAAGCCAGGGGATGAGGAGGTGGCCAGGGCTCTGTTTGAGACCCAGCTCCAACTCAAGATGCTGCGTGGTGAAGATATAAAGGACTTGAAATTTGGTTCAAATTTGTTTTTCATATCAAGCAATGATCGGTTTAGACATTATGTAACATCACCTGGGATGTCTGTGGTCCTCTTTTGCAACAAGACAACCCACAAGCAAGTGTTGTTGGTGTTGGAGCAAACCTGCAAGAGATTCCCATCAGTTAATTTCCTTAAGGTGGAGATTGAAGATCACCCCTACTTGGCAAAATCAGAAGGTGTGAACTGCATCCCAGCCTTTAAAATATACAAGAATGGATCAAGGGTTAAAGAAATTCCAGGCAACAACCACGACTTGCTGGAAAAATTAGTTAAATTATATAGCAGCTGA 2058 0.4475 MAEKTKNKVEIDLGCGLVGRIFHLKTNNRPRKSSVHSLPVKACNTAQQRDQAKNESKPPPNHEPKVPRDSSIGTIPTLKVEQNPARKSSSSHRAPSAHQNTQNGRASDAARTSIQRSHDSNEETKQQQKEHTVGNSLELARIITSTSHHQNNETKSPAKEFVLPITGNLLVNSSPRTSVTKSKELNTLSGSCSYNSNTNKGIMGNIMRKNSDELAQFRSPRNSRVDPEVLKSMGNEAYKQGRFEEALALYDRAIAVDSNKATYHCNKSAALIGLGRFLQAIVECEEAIRLEPSYGRAHTRLATIYFRLGEAEKALNCNETSPCVDTVLAFQAQALQNHLSKCTEARKVKDWKAILKETQAAISLGADSAPLVYSLQAEALLKLLRHQEAHTTYEKMPKFDLDCSNKLFGPVRSAYLLMISAQIYLAAGRFEDAVTASQQAAKLDPSSFEVNAVVRRARAVTSARMSGNLLFKASKFSEAYAVYNEGLEHDPIQLPCRSKLGQFEKAIEDCNVALILQPSYSKARLRRADCNAKLERWEAAIQDYEMLLREKPGDEEVARALFETQLQLKMLRGEDIKDLKFGSNLFFISSNDRFRHYVTSPGMSVVLFCNKTTHKQVLLVLEQTCKRFPSVNFLKVEIEDHPYLAKSEGVNCIPAFKIYKNGSRVKEIPGNNHDLLEKLVKLYSS 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01152 685 SMART tpr_5 261 294 IPR019734 GO:0005515
Pumo10g01152 685 SMART tpr_5 496 520 IPR019734 GO:0005515
Pumo10g01152 685 SMART tpr_5 460 493 IPR019734 GO:0005515
Pumo10g01152 685 SMART tpr_5 521 554 IPR019734 GO:0005515
Pumo10g01152 685 SMART tpr_5 227 260 IPR019734 GO:0005515
Pumo10g01152 685 SMART tpr_5 414 447 IPR019734 GO:0005515
Pumo10g01152 685 Pfam TPR repeat 234 269 - -
Pumo10g01152 685 SUPERFAMILY Thioredoxin-like 506 680 IPR036249 -
Pumo10g01152 685 MobiDBLite consensus disorder prediction 75 114 - -
Pumo10g01152 685 CDD TRX_family 594 681 - -
Pumo10g01152 685 Pfam Tetratricopeptide repeat 499 554 - -
Pumo10g01152 685 Pfam Tetratricopeptide repeat 421 491 - -
Pumo10g01152 685 Gene3D Glutaredoxin 581 684 - -
Pumo10g01152 685 SUPERFAMILY TPR-like 227 449 IPR011990 GO:0005515
Pumo10g01152 685 Pfam Thioredoxin 615 679 IPR013766 -
Pumo10g01152 685 MobiDBLite consensus disorder prediction 29 135 - -
Pumo10g01152 685 Gene3D Tetratricopeptide repeat domain 225 572 IPR011990 GO:0005515
Pumo10g01152 685 ProSiteProfiles TPR repeat profile. 414 447 IPR019734 GO:0005515
Pumo10g01152 685 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 6 681 IPR044534 -
Pumo10g01152 685 ProSiteProfiles TPR repeat profile. 227 260 IPR019734 GO:0005515
Pumo10g01152 685 MobiDBLite consensus disorder prediction 31 54 - -
Pumo10g01152 685 SUPERFAMILY TPR-like 465 569 IPR011990 GO:0005515
Pumo10g01152 685 MobiDBLite consensus disorder prediction 115 129 - -
Pumo10g01152 685 Coils Coil 527 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01152 Pumo-Chr10 14862371 14865887 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01152 K09527 - gmx:100814381 1240.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01152 10 14862371 14865887 Pumo10g01152 10 14862371 14865887 ECH
Pumo9g01335 9 39018247 39021863 Pumo10g01152 10 14862371 14865887 PCT