Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo9g01188 ATGGATGTTAAAATAGCATTGCACACGCTTTTGCTATTTCTTCTATTTTCTGCCATTTTCCCACTCTCTTTCTCAGCTCAACCCCGCAACTCCAAGAAGCCCTCCACCCCATCAGCAGTTTTCAAAGTTCAGGGAAATGTGTACCCTCTTGGGCATTACACAGTGTCCCTCAACATTGGCTATCCCCCCAAGCTTTACGACCTTGACATTGACTCAGGTAGTGACCTCACTTGGGTTCAGTGTGATGCACCATGTAAAGGTTGCACCAAGCCTCGTGATCAACTTTATAAACCCAATCACAACCTTGTGCATTGTGTGGACCAGCTTTGTTCTGAAGTGCACTTATCAACAGACTATAATTGTGCTTCCCCAGATGACCAATGTGACTATGAAGTTGAGTATGCAGATCATGGATCATCTCTGGGTGTGCTAGTCCGGGACTACATTCCCTTTCAATTCACCAATGGCTCTGTGGCGCGCCCTAGGATAGCCTTTGGGTGTGGATATGATCAGAAGTATTCTGGTGCTAACTCCCCACCTGCTACAGCAGGAGTCCTTGGCCTTGGAAATGGCAGAGCAAGCATTTTATCTCAGCTTCATTCTCTGGGTTTGATCCGCAACGTGGTTGGCCACTGCCTAAGTGCTCAAGGAGGAGGGTTTTTATTCTTTGGAGATGATTTCATTCCCTCTTCAGGAATTGTTTGGACATCCATGTTGCCTAGTTCTTCAGAGAAACACTACAGCTCAGGACCAGCAGAACTATTGTTCAATGGAAAGGCTACTAATGTTAAGGGTCTTGAACTTATCTTCGATAGTGGGAGCTCTTACACATACTTCAACTCCCAAGCCTATCAAGCTGTTGTTGATTTGGTAACTAAAGATTTAAAGGGAAAACAGTTGAAAAGAGCAACTGAGGATCCATCACTTCCAATTTGTTGGAAGGGTGCAAAGTCTTTCAAATCGTTAAGTGATGCCAAGAAATATTTCAAGCCCCTAGCATTGCGCTTCACAAGAAACAAGAATTTGCAGATGCATCTACCACCAGAAGCTTATCTTATTATCACTGTGAGCACCTTTTAA 1080 0.4426 MDVKIALHTLLLFLLFSAIFPLSFSAQPRNSKKPSTPSAVFKVQGNVYPLGHYTVSLNIGYPPKLYDLDIDSGSDLTWVQCDAPCKGCTKPRDQLYKPNHNLVHCVDQLCSEVHLSTDYNCASPDDQCDYEVEYADHGSSLGVLVRDYIPFQFTNGSVARPRIAFGCGYDQKYSGANSPPATAGVLGLGNGRASILSQLHSLGLIRNVVGHCLSAQGGGFLFFGDDFIPSSGIVWTSMLPSSSEKHYSSGPAELLFNGKATNVKGLELIFDSGSSYTYFNSQAYQAVVDLVTKDLKGKQLKRATEDPSLPICWKGAKSFKSLSDAKKYFKPLALRFTRNKNLQMHLPPEAYLIITVSTF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo9g01188 359 PANTHER ASPARTYL PROTEASES 45 353 IPR001461 GO:0004190|GO:0006508
Pumo9g01188 359 Pfam Xylanase inhibitor C-terminal 267 344 IPR032799 -
Pumo9g01188 359 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 268 279 IPR001969 GO:0004190|GO:0006508
Pumo9g01188 359 Gene3D Acid Proteases 229 358 IPR021109 -
Pumo9g01188 359 Gene3D Acid Proteases 27 225 IPR021109 -
Pumo9g01188 359 FunFam Aspartyl protease family protein 29 225 - -
Pumo9g01188 359 Pfam Xylanase inhibitor N-terminal 53 225 IPR032861 -
Pumo9g01188 359 SUPERFAMILY Acid proteases 45 354 IPR021109 -
Pumo9g01188 359 ProSiteProfiles Peptidase family A1 domain profile. 53 359 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo9g01188 Pumo-Chr9 35552004 35555845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo9g01188 18 355 Miscellaneous Gene Families AT1G44130 56.342 2.54e-142 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo9g01188 - - gmx:100790299 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01188 9 35552004 35555845 Pumo9g01188 9 35552004 35555845 ECH
Pumo9g01188 9 35552004 35555845 Pumo10g01747 10 22914706 22918494 PCT