Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01747 ATGAATTCAAAGATGAAGTCAGGGAAGTTGAGATTTTTGGTTCTGCTAGTCTTGTTCAGCTCCTCTACTTGTTCAGCTTGGTTTGGTAGTAAACACAAAAGTTCAAGTGGAAGGAGCTCCTTTCGTCCGGATGAAGCTTCATCCTCATCGTCATCGTCGTCGTCGTCATCGTCACCATACATACTAAACCGTTTTCGTGCTGGCTCATCCGTCGTGTTCCCGGTTCACGGCAATGTTTACCCAGTTGGGTTTTATAATGTTACTCTCAACATCGGCCAACCACCCAGGCCATATTTTCTTGATATTGACACGGGTAGCGACCTCACCTGGCTTCAATGTGATGCCCCTTGTTCCCGTTGCTCTCAGACACCACATCCACTTTATAGGCCCAGCAATGACTTAGTGCCCTGCAGGCATGCTCTCTGTGCATCCTTGCACCAAACTGATAACTACGACTGTGAAGTCCCACATCAATGTGACTATGAAGTTGAGTATGCAGATCATTACTCATCCCTTGGTGTACTTCTCCATGATGTCTACACTCTCAACTTTACAAATGGAGTCCAACTTAAAGTTCGCATGGCACTTGGATGTGGATATGATCAGATTTTTCCAGATCCTTCTCACCACCCATTAGATGGAATGCTTGGCCTTGGCAGGGGAAAAACCAGCTTGACATCACAGCTGAATAATCAGGGTTTGGTGCGAAATGTGGTTGGACACTGTTTGAGTGCACAAGGTGGAGGGTATATCTTCTTTGGAGATGTCTATGATTCTTCTAGACTGACTTGGACTCCAATGTCATCCAGAGATTACAAACATTACTCAGCAGCAGGGGCAGCTGAACTTCTTTTTGGAGGGAAGAAGAGTGGGGTTGGAAGTCTTCATGCTGTTTTTGACACTGGGAGTTCTTACACCTATTTCAACTCTTATGCTTACCAAGCACTAATTTCTTGGTTGAGTAAGGAATTAGCTGGAAAGTCCCTAAGAGAAGCACATGATCAAACTCTCCCTCTCTGTTGGCATGGTAAACGACCTTTCAGAAGCATATATGAAGCGAGAAAATACTTCAAGCCAATTGCGCTTAGTTTCACCAGCAATGGGAGAAGTAAAGCTCAGTTTGAAATCCCTCCTGAAGCATATCTGATAGTATCTAACATGGGAAATGTTTGCTTGGGCATTCTAAACGGCTCTGAAGTAGGGATGGGGGATCTGAACCTAATTGGAGACATATCCATGCTAAACAAAGTGATGGTATTTGACAACGACAAGCAGTTGATTGGTTGGACACCGGCAGATTGTGACCGGGTTCCAAAATCCAGAGATGTCAGCATGTGA 1338 0.4477 MNSKMKSGKLRFLVLLVLFSSSTCSAWFGSKHKSSSGRSSFRPDEASSSSSSSSSSSSPYILNRFRAGSSVVFPVHGNVYPVGFYNVTLNIGQPPRPYFLDIDTGSDLTWLQCDAPCSRCSQTPHPLYRPSNDLVPCRHALCASLHQTDNYDCEVPHQCDYEVEYADHYSSLGVLLHDVYTLNFTNGVQLKVRMALGCGYDQIFPDPSHHPLDGMLGLGRGKTSLTSQLNNQGLVRNVVGHCLSAQGGGYIFFGDVYDSSRLTWTPMSSRDYKHYSAAGAAELLFGGKKSGVGSLHAVFDTGSSYTYFNSYAYQALISWLSKELAGKSLREAHDQTLPLCWHGKRPFRSIYEARKYFKPIALSFTSNGRSKAQFEIPPEAYLIVSNMGNVCLGILNGSEVGMGDLNLIGDISMLNKVMVFDNDKQLIGWTPADCDRVPKSRDVSM 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01747 445 Gene3D Acid Proteases 255 438 IPR021109 -
Pumo10g01747 445 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Pumo10g01747 445 PRINTS Pepsin (A1) aspartic protease family signature 406 421 IPR001461 GO:0004190|GO:0006508
Pumo10g01747 445 PRINTS Pepsin (A1) aspartic protease family signature 297 308 IPR001461 GO:0004190|GO:0006508
Pumo10g01747 445 FunFam Aspartic proteinase Asp1 isoform A 258 438 - -
Pumo10g01747 445 PANTHER ASPARTYL PROTEASES 28 428 IPR001461 GO:0004190|GO:0006508
Pumo10g01747 445 MobiDBLite consensus disorder prediction 28 59 - -
Pumo10g01747 445 FunFam Aspartyl protease family protein 62 255 - -
Pumo10g01747 445 Pfam Xylanase inhibitor C-terminal 294 430 IPR032799 -
Pumo10g01747 445 ProSiteProfiles Peptidase family A1 domain profile. 85 430 IPR033121 -
Pumo10g01747 445 Gene3D Acid Proteases 62 254 IPR021109 -
Pumo10g01747 445 Pfam Xylanase inhibitor N-terminal 85 255 IPR032861 -
Pumo10g01747 445 SUPERFAMILY Acid proteases 77 437 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01747 Pumo-Chr10 22914706 22918494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01747 69 440 Miscellaneous Gene Families AT1G44130 51.852 2.07e-140 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01747 - - gmx:100819172 835.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g01188 9 35552004 35555845 Pumo10g01747 10 22914706 22918494 PCT